miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30189 5' -54.3 NC_006273.1 + 45929 0.66 0.9847
Target:  5'- aUCCGacgagacuUCGUCgCGAgGCcGGCUCCCGg- -3'
miRNA:   3'- cAGGU--------AGCAG-GCU-UGuUCGAGGGCag -5'
30189 5' -54.3 NC_006273.1 + 122543 0.66 0.982874
Target:  5'- -aCCA-CG-CCGAGCAgcAGCUCCUG-Cg -3'
miRNA:   3'- caGGUaGCaGGCUUGU--UCGAGGGCaG- -5'
30189 5' -54.3 NC_006273.1 + 209180 0.66 0.982874
Target:  5'- cGUCCGUCGUUuccgCGGACGcGGCUUCCc-- -3'
miRNA:   3'- -CAGGUAGCAG----GCUUGU-UCGAGGGcag -5'
30189 5' -54.3 NC_006273.1 + 72968 0.66 0.980889
Target:  5'- aGUCCGUUggcggaGUCCGAGgAGugcugaccgccGCUCCCGcCg -3'
miRNA:   3'- -CAGGUAG------CAGGCUUgUU-----------CGAGGGCaG- -5'
30189 5' -54.3 NC_006273.1 + 212121 0.66 0.980889
Target:  5'- -gCCAagGUCgCGGAC-AGUUCCuCGUCg -3'
miRNA:   3'- caGGUagCAG-GCUUGuUCGAGG-GCAG- -5'
30189 5' -54.3 NC_006273.1 + 87867 0.66 0.978737
Target:  5'- -cCCAUCGccucCCGAGCGAGCgggCCGcCg -3'
miRNA:   3'- caGGUAGCa---GGCUUGUUCGag-GGCaG- -5'
30189 5' -54.3 NC_006273.1 + 234095 0.67 0.968314
Target:  5'- aUCCGUacggcCGUCCGAGCGgcagcAGCgugCCCG-Cg -3'
miRNA:   3'- cAGGUA-----GCAGGCUUGU-----UCGa--GGGCaG- -5'
30189 5' -54.3 NC_006273.1 + 184539 0.67 0.968314
Target:  5'- uUCC-UCGUCCGGACAugcgGGUUUCCa-- -3'
miRNA:   3'- cAGGuAGCAGGCUUGU----UCGAGGGcag -5'
30189 5' -54.3 NC_006273.1 + 39202 0.67 0.968314
Target:  5'- aUCCGUacggcCGUCCGAGCGgcagcAGCgugCCCG-Cg -3'
miRNA:   3'- cAGGUA-----GCAGGCUUGU-----UCGa--GGGCaG- -5'
30189 5' -54.3 NC_006273.1 + 112451 0.67 0.965223
Target:  5'- cGUUCGUCGUCCccagGGACcggcguggcagGAGCUUCCGcCg -3'
miRNA:   3'- -CAGGUAGCAGG----CUUG-----------UUCGAGGGCaG- -5'
30189 5' -54.3 NC_006273.1 + 37599 0.67 0.965223
Target:  5'- cUCCGUCucgcUCUGGAUggGCUCcggguCCGUCa -3'
miRNA:   3'- cAGGUAGc---AGGCUUGuuCGAG-----GGCAG- -5'
30189 5' -54.3 NC_006273.1 + 30571 0.67 0.961926
Target:  5'- cUCCGUCGUCCuu-CGAGCUCgUG-Cg -3'
miRNA:   3'- cAGGUAGCAGGcuuGUUCGAGgGCaG- -5'
30189 5' -54.3 NC_006273.1 + 117623 0.67 0.958417
Target:  5'- aUCCcgCGUCCu-ACGGcGCcCCCGUCg -3'
miRNA:   3'- cAGGuaGCAGGcuUGUU-CGaGGGCAG- -5'
30189 5' -54.3 NC_006273.1 + 174605 0.67 0.958417
Target:  5'- uGUCCGUCGUCCGuuugGACAA-CUUUagCGUCg -3'
miRNA:   3'- -CAGGUAGCAGGC----UUGUUcGAGG--GCAG- -5'
30189 5' -54.3 NC_006273.1 + 98611 0.67 0.958417
Target:  5'- uUCCAcUCGUCCGuACGcGCgacCUCGUCg -3'
miRNA:   3'- cAGGU-AGCAGGCuUGUuCGa--GGGCAG- -5'
30189 5' -54.3 NC_006273.1 + 179222 0.68 0.946585
Target:  5'- cGUCaCAgagggCGUUCGGACGAcCUCCgCGUCg -3'
miRNA:   3'- -CAG-GUa----GCAGGCUUGUUcGAGG-GCAG- -5'
30189 5' -54.3 NC_006273.1 + 183850 0.69 0.916229
Target:  5'- cGUCCucuGUCGUCCcggccuccgucgaGAGCGAGUugUCCuCGUCg -3'
miRNA:   3'- -CAGG---UAGCAGG-------------CUUGUUCG--AGG-GCAG- -5'
30189 5' -54.3 NC_006273.1 + 194309 0.69 0.913361
Target:  5'- -aCCGUCGUCCGAuuACAAcaacgacgucauuucGCcUCCCaGUCa -3'
miRNA:   3'- caGGUAGCAGGCU--UGUU---------------CG-AGGG-CAG- -5'
30189 5' -54.3 NC_006273.1 + 215027 0.7 0.891695
Target:  5'- -aCCGUCGUCUGAGCAGugugggcGCUgCCGg- -3'
miRNA:   3'- caGGUAGCAGGCUUGUU-------CGAgGGCag -5'
30189 5' -54.3 NC_006273.1 + 156318 0.71 0.864395
Target:  5'- -aCCGUCGUCCGGuaaAGGaacaaCCCGUCg -3'
miRNA:   3'- caGGUAGCAGGCUug-UUCga---GGGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.