Results 21 - 26 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
30189 | 5' | -54.3 | NC_006273.1 | + | 87867 | 0.66 | 0.978737 |
Target: 5'- -cCCAUCGccucCCGAGCGAGCgggCCGcCg -3' miRNA: 3'- caGGUAGCa---GGCUUGUUCGag-GGCaG- -5' |
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30189 | 5' | -54.3 | NC_006273.1 | + | 72968 | 0.66 | 0.980889 |
Target: 5'- aGUCCGUUggcggaGUCCGAGgAGugcugaccgccGCUCCCGcCg -3' miRNA: 3'- -CAGGUAG------CAGGCUUgUU-----------CGAGGGCaG- -5' |
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30189 | 5' | -54.3 | NC_006273.1 | + | 212121 | 0.66 | 0.980889 |
Target: 5'- -gCCAagGUCgCGGAC-AGUUCCuCGUCg -3' miRNA: 3'- caGGUagCAG-GCUUGuUCGAGG-GCAG- -5' |
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30189 | 5' | -54.3 | NC_006273.1 | + | 209180 | 0.66 | 0.982874 |
Target: 5'- cGUCCGUCGUUuccgCGGACGcGGCUUCCc-- -3' miRNA: 3'- -CAGGUAGCAG----GCUUGU-UCGAGGGcag -5' |
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30189 | 5' | -54.3 | NC_006273.1 | + | 122543 | 0.66 | 0.982874 |
Target: 5'- -aCCA-CG-CCGAGCAgcAGCUCCUG-Cg -3' miRNA: 3'- caGGUaGCaGGCUUGU--UCGAGGGCaG- -5' |
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30189 | 5' | -54.3 | NC_006273.1 | + | 45929 | 0.66 | 0.9847 |
Target: 5'- aUCCGacgagacuUCGUCgCGAgGCcGGCUCCCGg- -3' miRNA: 3'- cAGGU--------AGCAG-GCU-UGuUCGAGGGCag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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