Results 1 - 20 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30189 | 5' | -54.3 | NC_006273.1 | + | 87867 | 0.66 | 0.978737 |
Target: 5'- -cCCAUCGccucCCGAGCGAGCgggCCGcCg -3' miRNA: 3'- caGGUAGCa---GGCUUGUUCGag-GGCaG- -5' |
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30189 | 5' | -54.3 | NC_006273.1 | + | 38752 | 0.76 | 0.605169 |
Target: 5'- -aCCGUCGUgCCGGcccaccgccgGCGcAGCUCCCGUCc -3' miRNA: 3'- caGGUAGCA-GGCU----------UGU-UCGAGGGCAG- -5' |
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30189 | 5' | -54.3 | NC_006273.1 | + | 133796 | 0.74 | 0.713061 |
Target: 5'- cUCCGUCGUuaucuuccCUGAGCGAGCgcgaacgccgcgCCCGUCg -3' miRNA: 3'- cAGGUAGCA--------GGCUUGUUCGa-----------GGGCAG- -5' |
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30189 | 5' | -54.3 | NC_006273.1 | + | 7753 | 0.72 | 0.816537 |
Target: 5'- -gCCGUCGaUCGAGCGGGCUCCgGg- -3' miRNA: 3'- caGGUAGCaGGCUUGUUCGAGGgCag -5' |
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30189 | 5' | -54.3 | NC_006273.1 | + | 194309 | 0.69 | 0.913361 |
Target: 5'- -aCCGUCGUCCGAuuACAAcaacgacgucauuucGCcUCCCaGUCa -3' miRNA: 3'- caGGUAGCAGGCU--UGUU---------------CG-AGGG-CAG- -5' |
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30189 | 5' | -54.3 | NC_006273.1 | + | 183850 | 0.69 | 0.916229 |
Target: 5'- cGUCCucuGUCGUCCcggccuccgucgaGAGCGAGUugUCCuCGUCg -3' miRNA: 3'- -CAGG---UAGCAGG-------------CUUGUUCG--AGG-GCAG- -5' |
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30189 | 5' | -54.3 | NC_006273.1 | + | 179222 | 0.68 | 0.946585 |
Target: 5'- cGUCaCAgagggCGUUCGGACGAcCUCCgCGUCg -3' miRNA: 3'- -CAG-GUa----GCAGGCUUGUUcGAGG-GCAG- -5' |
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30189 | 5' | -54.3 | NC_006273.1 | + | 98611 | 0.67 | 0.958417 |
Target: 5'- uUCCAcUCGUCCGuACGcGCgacCUCGUCg -3' miRNA: 3'- cAGGU-AGCAGGCuUGUuCGa--GGGCAG- -5' |
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30189 | 5' | -54.3 | NC_006273.1 | + | 174605 | 0.67 | 0.958417 |
Target: 5'- uGUCCGUCGUCCGuuugGACAA-CUUUagCGUCg -3' miRNA: 3'- -CAGGUAGCAGGC----UUGUUcGAGG--GCAG- -5' |
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30189 | 5' | -54.3 | NC_006273.1 | + | 39202 | 0.67 | 0.968314 |
Target: 5'- aUCCGUacggcCGUCCGAGCGgcagcAGCgugCCCG-Cg -3' miRNA: 3'- cAGGUA-----GCAGGCUUGU-----UCGa--GGGCaG- -5' |
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30189 | 5' | -54.3 | NC_006273.1 | + | 72968 | 0.66 | 0.980889 |
Target: 5'- aGUCCGUUggcggaGUCCGAGgAGugcugaccgccGCUCCCGcCg -3' miRNA: 3'- -CAGGUAG------CAGGCUUgUU-----------CGAGGGCaG- -5' |
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30189 | 5' | -54.3 | NC_006273.1 | + | 45929 | 0.66 | 0.9847 |
Target: 5'- aUCCGacgagacuUCGUCgCGAgGCcGGCUCCCGg- -3' miRNA: 3'- cAGGU--------AGCAG-GCU-UGuUCGAGGGCag -5' |
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30189 | 5' | -54.3 | NC_006273.1 | + | 122543 | 0.66 | 0.982874 |
Target: 5'- -aCCA-CG-CCGAGCAgcAGCUCCUG-Cg -3' miRNA: 3'- caGGUaGCaGGCUUGU--UCGAGGGCaG- -5' |
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30189 | 5' | -54.3 | NC_006273.1 | + | 212121 | 0.66 | 0.980889 |
Target: 5'- -gCCAagGUCgCGGAC-AGUUCCuCGUCg -3' miRNA: 3'- caGGUagCAG-GCUUGuUCGAGG-GCAG- -5' |
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30189 | 5' | -54.3 | NC_006273.1 | + | 184539 | 0.67 | 0.968314 |
Target: 5'- uUCC-UCGUCCGGACAugcgGGUUUCCa-- -3' miRNA: 3'- cAGGuAGCAGGCUUGU----UCGAGGGcag -5' |
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30189 | 5' | -54.3 | NC_006273.1 | + | 44974 | 0.71 | 0.856888 |
Target: 5'- -cCCGUCGacguuguuuucUCCGAGCGGugaucGUUCCCGUCc -3' miRNA: 3'- caGGUAGC-----------AGGCUUGUU-----CGAGGGCAG- -5' |
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30189 | 5' | -54.3 | NC_006273.1 | + | 215027 | 0.7 | 0.891695 |
Target: 5'- -aCCGUCGUCUGAGCAGugugggcGCUgCCGg- -3' miRNA: 3'- caGGUAGCAGGCUUGUU-------CGAgGGCag -5' |
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30189 | 5' | -54.3 | NC_006273.1 | + | 117623 | 0.67 | 0.958417 |
Target: 5'- aUCCcgCGUCCu-ACGGcGCcCCCGUCg -3' miRNA: 3'- cAGGuaGCAGGcuUGUU-CGaGGGCAG- -5' |
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30189 | 5' | -54.3 | NC_006273.1 | + | 30571 | 0.67 | 0.961926 |
Target: 5'- cUCCGUCGUCCuu-CGAGCUCgUG-Cg -3' miRNA: 3'- cAGGUAGCAGGcuuGUUCGAGgGCaG- -5' |
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30189 | 5' | -54.3 | NC_006273.1 | + | 209180 | 0.66 | 0.982874 |
Target: 5'- cGUCCGUCGUUuccgCGGACGcGGCUUCCc-- -3' miRNA: 3'- -CAGGUAGCAG----GCUUGU-UCGAGGGcag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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