Results 1 - 20 of 80 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3019 | 5' | -61.4 | NC_001493.1 | + | 48125 | 0.67 | 0.625669 |
Target: 5'- cGGCGCaCCCGAccccguaacugGACUcuacucccagugCCCGAcgcucgugGCCGGGu -3' miRNA: 3'- cUCGCG-GGGCU-----------CUGA------------GGGCU--------UGGCCC- -5' |
|||||||
3019 | 5' | -61.4 | NC_001493.1 | + | 100199 | 0.68 | 0.547711 |
Target: 5'- cGGGCGCCUgugcaagauCGAGAauCUCgCgGAACUGGGu -3' miRNA: 3'- -CUCGCGGG---------GCUCU--GAG-GgCUUGGCCC- -5' |
|||||||
3019 | 5' | -61.4 | NC_001493.1 | + | 23753 | 0.68 | 0.557329 |
Target: 5'- aGAGCGCUCCGAGGCacguaGAACCGc- -3' miRNA: 3'- -CUCGCGGGGCUCUGaggg-CUUGGCcc -5' |
|||||||
3019 | 5' | -61.4 | NC_001493.1 | + | 13588 | 0.68 | 0.557329 |
Target: 5'- --cCGUCCCGAGGCUCaCGAAgCGGu -3' miRNA: 3'- cucGCGGGGCUCUGAGgGCUUgGCCc -5' |
|||||||
3019 | 5' | -61.4 | NC_001493.1 | + | 129142 | 0.68 | 0.557329 |
Target: 5'- --cCGUCCCGAGGCUCaCGAAgCGGu -3' miRNA: 3'- cucGCGGGGCUCUGAGgGCUUgGCCc -5' |
|||||||
3019 | 5' | -61.4 | NC_001493.1 | + | 112709 | 0.67 | 0.606023 |
Target: 5'- cGGGCGaUCCCGGGGCUUCuCGA--UGGGu -3' miRNA: 3'- -CUCGC-GGGGCUCUGAGG-GCUugGCCC- -5' |
|||||||
3019 | 5' | -61.4 | NC_001493.1 | + | 69916 | 0.67 | 0.609948 |
Target: 5'- aGGaUGCCCCGguuucugacacggugGGACUCCUGAGCauGGa -3' miRNA: 3'- cUC-GCGGGGC---------------UCUGAGGGCUUGgcCC- -5' |
|||||||
3019 | 5' | -61.4 | NC_001493.1 | + | 113630 | 0.67 | 0.625669 |
Target: 5'- gGAGCGaCCCUGuguGACUCgUGucUCGGGg -3' miRNA: 3'- -CUCGC-GGGGCu--CUGAGgGCuuGGCCC- -5' |
|||||||
3019 | 5' | -61.4 | NC_001493.1 | + | 43750 | 0.67 | 0.625669 |
Target: 5'- ---aGCCCCGAuGACUCCgCGAugGCCGu- -3' miRNA: 3'- cucgCGGGGCU-CUGAGG-GCU--UGGCcc -5' |
|||||||
3019 | 5' | -61.4 | NC_001493.1 | + | 42071 | 0.69 | 0.500511 |
Target: 5'- gGGGCgGCCCCGGGACgugCCCccugugucuCCGGa -3' miRNA: 3'- -CUCG-CGGGGCUCUGa--GGGcuu------GGCCc -5' |
|||||||
3019 | 5' | -61.4 | NC_001493.1 | + | 19594 | 0.7 | 0.46319 |
Target: 5'- cGGUGCCgCGGGAgcguaccCUCCgCGAaauACCGGGg -3' miRNA: 3'- cUCGCGGgGCUCU-------GAGG-GCU---UGGCCC- -5' |
|||||||
3019 | 5' | -61.4 | NC_001493.1 | + | 120119 | 0.7 | 0.445521 |
Target: 5'- -cGCGcCCCCGGGugUgcccaaaCCCGAACaCGGa -3' miRNA: 3'- cuCGC-GGGGCUCugA-------GGGCUUG-GCCc -5' |
|||||||
3019 | 5' | -61.4 | NC_001493.1 | + | 128236 | 0.75 | 0.232931 |
Target: 5'- cGAGCGCCCCGA--C-CCCGGAcgcgacCCGGGa -3' miRNA: 3'- -CUCGCGGGGCUcuGaGGGCUU------GGCCC- -5' |
|||||||
3019 | 5' | -61.4 | NC_001493.1 | + | 12741 | 0.74 | 0.261473 |
Target: 5'- cGGGCGCUcuccaCCGAGACccccacUCCCGAAccuucCCGGGa -3' miRNA: 3'- -CUCGCGG-----GGCUCUG------AGGGCUU-----GGCCC- -5' |
|||||||
3019 | 5' | -61.4 | NC_001493.1 | + | 128295 | 0.74 | 0.261473 |
Target: 5'- cGGGCGCUcuccaCCGAGACccccacUCCCGAAccuucCCGGGa -3' miRNA: 3'- -CUCGCGG-----GGCUCUG------AGGGCUU-----GGCCC- -5' |
|||||||
3019 | 5' | -61.4 | NC_001493.1 | + | 14680 | 0.72 | 0.348869 |
Target: 5'- gGAGUGUCCCGAGugcgGCUCCgGGGgCGGa -3' miRNA: 3'- -CUCGCGGGGCUC----UGAGGgCUUgGCCc -5' |
|||||||
3019 | 5' | -61.4 | NC_001493.1 | + | 130234 | 0.72 | 0.348869 |
Target: 5'- gGAGUGUCCCGAGugcgGCUCCgGGGgCGGa -3' miRNA: 3'- -CUCGCGGGGCUC----UGAGGgCUUgGCCc -5' |
|||||||
3019 | 5' | -61.4 | NC_001493.1 | + | 29114 | 0.7 | 0.437693 |
Target: 5'- gGAGCGCCUCGAGcGCgUCCUuuuuGGuCCGGGc -3' miRNA: 3'- -CUCGCGGGGCUC-UG-AGGG----CUuGGCCC- -5' |
|||||||
3019 | 5' | -61.4 | NC_001493.1 | + | 112672 | 0.7 | 0.437693 |
Target: 5'- cGAGCcuGCgCCCGAGAUcCCCGAugGCCuGGa -3' miRNA: 3'- -CUCG--CG-GGGCUCUGaGGGCU--UGGcCC- -5' |
|||||||
3019 | 5' | -61.4 | NC_001493.1 | + | 4565 | 0.7 | 0.445521 |
Target: 5'- -cGCGcCCCCGGGugUgcccaaaCCCGAACaCGGa -3' miRNA: 3'- cuCGC-GGGGCUCugA-------GGGCUUG-GCCc -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home