miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30190 3' -53.2 NC_006273.1 + 87472 0.66 0.988664
Target:  5'- --uGACAC-UCCUCCCcuuccucaGGCGGcCCGGg -3'
miRNA:   3'- cuuCUGUGaAGGAGGG--------UUGCCuGGUU- -5'
30190 3' -53.2 NC_006273.1 + 214894 0.66 0.983753
Target:  5'- --cGACGuugcUUUCCUCCCAGCGGGuuCUGAu -3'
miRNA:   3'- cuuCUGU----GAAGGAGGGUUGCCU--GGUU- -5'
30190 3' -53.2 NC_006273.1 + 1780 0.67 0.979679
Target:  5'- uGggGACGCUUCggaaCCAugGGccGCCAAc -3'
miRNA:   3'- -CuuCUGUGAAGgag-GGUugCC--UGGUU- -5'
30190 3' -53.2 NC_006273.1 + 7163 0.67 0.979679
Target:  5'- gGGAGGCACUUCggcguucuUUCCCAACGG-Cg-- -3'
miRNA:   3'- -CUUCUGUGAAG--------GAGGGUUGCCuGguu -5'
30190 3' -53.2 NC_006273.1 + 214009 0.67 0.977378
Target:  5'- uAGGGgACUaCCUCCuCGACGGuCCAu -3'
miRNA:   3'- cUUCUgUGAaGGAGG-GUUGCCuGGUu -5'
30190 3' -53.2 NC_006273.1 + 87858 0.67 0.974891
Target:  5'- --cGGCGCgcccccaucgCCUCCCGagcgaGCGGGCCGc -3'
miRNA:   3'- cuuCUGUGaa--------GGAGGGU-----UGCCUGGUu -5'
30190 3' -53.2 NC_006273.1 + 36510 0.67 0.974891
Target:  5'- cGgcGGCGCggUCCgucgagaCCGGCGGACCGc -3'
miRNA:   3'- -CuuCUGUGa-AGGag-----GGUUGCCUGGUu -5'
30190 3' -53.2 NC_006273.1 + 50671 0.67 0.97221
Target:  5'- uGGAGACGCUcagCCggCCCGACGaACCu- -3'
miRNA:   3'- -CUUCUGUGAa--GGa-GGGUUGCcUGGuu -5'
30190 3' -53.2 NC_006273.1 + 51518 0.68 0.95942
Target:  5'- cGAGGACAacUCgCUCUCGACGGagGCCGGg -3'
miRNA:   3'- -CUUCUGUgaAG-GAGGGUUGCC--UGGUU- -5'
30190 3' -53.2 NC_006273.1 + 183238 0.68 0.947504
Target:  5'- --cGACACUgCCcCCCGuUGGACCAGg -3'
miRNA:   3'- cuuCUGUGAaGGaGGGUuGCCUGGUU- -5'
30190 3' -53.2 NC_006273.1 + 82326 0.69 0.933479
Target:  5'- --cGACAUUUUC-CCC-ACGGGCCAGa -3'
miRNA:   3'- cuuCUGUGAAGGaGGGuUGCCUGGUU- -5'
30190 3' -53.2 NC_006273.1 + 187854 0.76 0.639432
Target:  5'- gGGAGAUACggcgUUCUCCCG-CGGGCCAc -3'
miRNA:   3'- -CUUCUGUGa---AGGAGGGUuGCCUGGUu -5'
30190 3' -53.2 NC_006273.1 + 187470 1.06 0.011015
Target:  5'- gGAAGACACUUCCUCCCAACGGACCAAg -3'
miRNA:   3'- -CUUCUGUGAAGGAGGGUUGCCUGGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.