Results 1 - 13 of 13 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30190 | 3' | -53.2 | NC_006273.1 | + | 1780 | 0.67 | 0.979679 |
Target: 5'- uGggGACGCUUCggaaCCAugGGccGCCAAc -3' miRNA: 3'- -CuuCUGUGAAGgag-GGUugCC--UGGUU- -5' |
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30190 | 3' | -53.2 | NC_006273.1 | + | 7163 | 0.67 | 0.979679 |
Target: 5'- gGGAGGCACUUCggcguucuUUCCCAACGG-Cg-- -3' miRNA: 3'- -CUUCUGUGAAG--------GAGGGUUGCCuGguu -5' |
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30190 | 3' | -53.2 | NC_006273.1 | + | 36510 | 0.67 | 0.974891 |
Target: 5'- cGgcGGCGCggUCCgucgagaCCGGCGGACCGc -3' miRNA: 3'- -CuuCUGUGa-AGGag-----GGUUGCCUGGUu -5' |
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30190 | 3' | -53.2 | NC_006273.1 | + | 50671 | 0.67 | 0.97221 |
Target: 5'- uGGAGACGCUcagCCggCCCGACGaACCu- -3' miRNA: 3'- -CUUCUGUGAa--GGa-GGGUUGCcUGGuu -5' |
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30190 | 3' | -53.2 | NC_006273.1 | + | 51518 | 0.68 | 0.95942 |
Target: 5'- cGAGGACAacUCgCUCUCGACGGagGCCGGg -3' miRNA: 3'- -CUUCUGUgaAG-GAGGGUUGCC--UGGUU- -5' |
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30190 | 3' | -53.2 | NC_006273.1 | + | 82326 | 0.69 | 0.933479 |
Target: 5'- --cGACAUUUUC-CCC-ACGGGCCAGa -3' miRNA: 3'- cuuCUGUGAAGGaGGGuUGCCUGGUU- -5' |
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30190 | 3' | -53.2 | NC_006273.1 | + | 87472 | 0.66 | 0.988664 |
Target: 5'- --uGACAC-UCCUCCCcuuccucaGGCGGcCCGGg -3' miRNA: 3'- cuuCUGUGaAGGAGGG--------UUGCCuGGUU- -5' |
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30190 | 3' | -53.2 | NC_006273.1 | + | 87858 | 0.67 | 0.974891 |
Target: 5'- --cGGCGCgcccccaucgCCUCCCGagcgaGCGGGCCGc -3' miRNA: 3'- cuuCUGUGaa--------GGAGGGU-----UGCCUGGUu -5' |
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30190 | 3' | -53.2 | NC_006273.1 | + | 183238 | 0.68 | 0.947504 |
Target: 5'- --cGACACUgCCcCCCGuUGGACCAGg -3' miRNA: 3'- cuuCUGUGAaGGaGGGUuGCCUGGUU- -5' |
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30190 | 3' | -53.2 | NC_006273.1 | + | 187470 | 1.06 | 0.011015 |
Target: 5'- gGAAGACACUUCCUCCCAACGGACCAAg -3' miRNA: 3'- -CUUCUGUGAAGGAGGGUUGCCUGGUU- -5' |
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30190 | 3' | -53.2 | NC_006273.1 | + | 187854 | 0.76 | 0.639432 |
Target: 5'- gGGAGAUACggcgUUCUCCCG-CGGGCCAc -3' miRNA: 3'- -CUUCUGUGa---AGGAGGGUuGCCUGGUu -5' |
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30190 | 3' | -53.2 | NC_006273.1 | + | 214009 | 0.67 | 0.977378 |
Target: 5'- uAGGGgACUaCCUCCuCGACGGuCCAu -3' miRNA: 3'- cUUCUgUGAaGGAGG-GUUGCCuGGUu -5' |
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30190 | 3' | -53.2 | NC_006273.1 | + | 214894 | 0.66 | 0.983753 |
Target: 5'- --cGACGuugcUUUCCUCCCAGCGGGuuCUGAu -3' miRNA: 3'- cuuCUGU----GAAGGAGGGUUGCCU--GGUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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