miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30190 5' -49 NC_006273.1 + 93849 0.66 0.999941
Target:  5'- aGG-CGUgaCGGGGAuugcuauaccuguuaGACGGcGUCGUCa -3'
miRNA:   3'- -CCaGCAa-GCCUCU---------------UUGCCaUAGCAGa -5'
30190 5' -49 NC_006273.1 + 28159 0.66 0.999889
Target:  5'- cGGUcCGUg-GGAGAcGCGGguucacgcGUCGUCa -3'
miRNA:   3'- -CCA-GCAagCCUCUuUGCCa-------UAGCAGa -5'
30190 5' -49 NC_006273.1 + 105188 0.67 0.99971
Target:  5'- aGGUagc-CGGAGAcGGCGGUuacguaGUCGUCUa -3'
miRNA:   3'- -CCAgcaaGCCUCU-UUGCCA------UAGCAGA- -5'
30190 5' -49 NC_006273.1 + 177185 0.68 0.999443
Target:  5'- --gUGUUCgaGGAgGAGACGGUGUgGUCa -3'
miRNA:   3'- ccaGCAAG--CCU-CUUUGCCAUAgCAGa -5'
30190 5' -49 NC_006273.1 + 193115 0.68 0.999164
Target:  5'- gGGUCuccggCGGuaacGAcGGCGGUGUCGUCg -3'
miRNA:   3'- -CCAGcaa--GCCu---CU-UUGCCAUAGCAGa -5'
30190 5' -49 NC_006273.1 + 188385 0.69 0.997898
Target:  5'- aGUCGggcggcgUCGGGGAcGCGGUGg-GUCg -3'
miRNA:   3'- cCAGCa------AGCCUCUuUGCCAUagCAGa -5'
30190 5' -49 NC_006273.1 + 156380 0.69 0.997898
Target:  5'- gGGUgCGgg-GGGGAGACGG-GUCGUCc -3'
miRNA:   3'- -CCA-GCaagCCUCUUUGCCaUAGCAGa -5'
30190 5' -49 NC_006273.1 + 158212 0.69 0.99751
Target:  5'- aGGUCGUgcagCGuGAGgcGCGGgcgcgCGUCg -3'
miRNA:   3'- -CCAGCAa---GC-CUCuuUGCCaua--GCAGa -5'
30190 5' -49 NC_006273.1 + 127147 0.7 0.997064
Target:  5'- cGUCG-UCGGuGgcACGGUaAUCGUCc -3'
miRNA:   3'- cCAGCaAGCCuCuuUGCCA-UAGCAGa -5'
30190 5' -49 NC_006273.1 + 99316 0.7 0.995974
Target:  5'- cGUCG-UCGGAGGc-CGGUgcGUCGUCc -3'
miRNA:   3'- cCAGCaAGCCUCUuuGCCA--UAGCAGa -5'
30190 5' -49 NC_006273.1 + 105151 0.7 0.995315
Target:  5'- cGGUCGUUCaGGGGGAaaGCGG---CGUCc -3'
miRNA:   3'- -CCAGCAAG-CCUCUU--UGCCauaGCAGa -5'
30190 5' -49 NC_006273.1 + 170079 0.71 0.993735
Target:  5'- gGGUCGggcagCGGAGGuaaggaaggugcGGCGGUgGUCGUUg -3'
miRNA:   3'- -CCAGCaa---GCCUCU------------UUGCCA-UAGCAGa -5'
30190 5' -49 NC_006273.1 + 228718 0.71 0.993279
Target:  5'- gGGUUGUUCGGAaacggcgggacgggGAAACGGguggaaacagCGUCg -3'
miRNA:   3'- -CCAGCAAGCCU--------------CUUUGCCaua-------GCAGa -5'
30190 5' -49 NC_006273.1 + 168432 0.73 0.978492
Target:  5'- uGGUCuGUUCGGuG-GGCGG-AUCGUCg -3'
miRNA:   3'- -CCAG-CAAGCCuCuUUGCCaUAGCAGa -5'
30190 5' -49 NC_006273.1 + 213168 0.74 0.964568
Target:  5'- uGGU-GUUCGGAaaccGAGGCGGUGUCGcCc -3'
miRNA:   3'- -CCAgCAAGCCU----CUUUGCCAUAGCaGa -5'
30190 5' -49 NC_006273.1 + 187506 1.12 0.018594
Target:  5'- gGGUCGUUCGGAGAAACGGUAUCGUCUg -3'
miRNA:   3'- -CCAGCAAGCCUCUUUGCCAUAGCAGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.