miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30191 5' -53.6 NC_006273.1 + 140693 0.66 0.988881
Target:  5'- --aCGGCGGguGGUgGUggUgGUGGUGGa -3'
miRNA:   3'- caaGUCGCCguCUAgCA--GgUACCACU- -5'
30191 5' -53.6 NC_006273.1 + 114081 0.66 0.988881
Target:  5'- cGUUCGGCGagaGCGGG-CGgCgGUGGUGGg -3'
miRNA:   3'- -CAAGUCGC---CGUCUaGCaGgUACCACU- -5'
30191 5' -53.6 NC_006273.1 + 73766 0.66 0.988602
Target:  5'- --gCAGCGGCGccgccagcggCGaCCAUGGUGGg -3'
miRNA:   3'- caaGUCGCCGUcua-------GCaGGUACCACU- -5'
30191 5' -53.6 NC_006273.1 + 102139 0.66 0.987431
Target:  5'- --gCAGCGGCAGuggCG-CCGUcgccaccguacaGGUGAu -3'
miRNA:   3'- caaGUCGCCGUCua-GCaGGUA------------CCACU- -5'
30191 5' -53.6 NC_006273.1 + 144426 0.66 0.987431
Target:  5'- --gCGGCGGCGGAcgGUUCG-GGUGGc -3'
miRNA:   3'- caaGUCGCCGUCUagCAGGUaCCACU- -5'
30191 5' -53.6 NC_006273.1 + 47252 0.66 0.987431
Target:  5'- ----cGCGGCAGAcuuUCGUCaCGcUGGUGc -3'
miRNA:   3'- caaguCGCCGUCU---AGCAG-GU-ACCACu -5'
30191 5' -53.6 NC_006273.1 + 102315 0.66 0.985838
Target:  5'- ----cGCgGGCAGGUCGUgCGgcgGGUGGu -3'
miRNA:   3'- caaguCG-CCGUCUAGCAgGUa--CCACU- -5'
30191 5' -53.6 NC_006273.1 + 89293 0.66 0.985838
Target:  5'- ---aGGCGGCGGGcuuuuUUGUCCcgggGGUGGg -3'
miRNA:   3'- caagUCGCCGUCU-----AGCAGGua--CCACU- -5'
30191 5' -53.6 NC_006273.1 + 188395 0.66 0.985838
Target:  5'- -cUCGGCGcaCAGAuccaccgccUCGaCCGUGGUGAa -3'
miRNA:   3'- caAGUCGCc-GUCU---------AGCaGGUACCACU- -5'
30191 5' -53.6 NC_006273.1 + 208249 0.66 0.985838
Target:  5'- --gCAGCGGCGG---GUCCAUgaggcgGGUGAu -3'
miRNA:   3'- caaGUCGCCGUCuagCAGGUA------CCACU- -5'
30191 5' -53.6 NC_006273.1 + 90479 0.66 0.985838
Target:  5'- -gUCAGCGcGCGGAUCaGaUCGcGGUGAu -3'
miRNA:   3'- caAGUCGC-CGUCUAG-CaGGUaCCACU- -5'
30191 5' -53.6 NC_006273.1 + 160137 0.66 0.984096
Target:  5'- --gCGGCGGcCAGcgcuUCGUCCAUaGGUa- -3'
miRNA:   3'- caaGUCGCC-GUCu---AGCAGGUA-CCAcu -5'
30191 5' -53.6 NC_006273.1 + 44643 0.66 0.984096
Target:  5'- cGUUCGGCGGCAGcugguggCGUUCugccUGGaGAa -3'
miRNA:   3'- -CAAGUCGCCGUCua-----GCAGGu---ACCaCU- -5'
30191 5' -53.6 NC_006273.1 + 80061 0.66 0.984096
Target:  5'- -aUC-GCGGCAGGcgcacUCGUCCAgcagcgaGGUGu -3'
miRNA:   3'- caAGuCGCCGUCU-----AGCAGGUa------CCACu -5'
30191 5' -53.6 NC_006273.1 + 105941 0.66 0.982195
Target:  5'- -gUgGGCGGCAcGAUCaucuGUCCuagggGGUGAc -3'
miRNA:   3'- caAgUCGCCGU-CUAG----CAGGua---CCACU- -5'
30191 5' -53.6 NC_006273.1 + 220172 0.66 0.980129
Target:  5'- --gUAGUGGUugGGGUCGUCCAucUGGaUGGc -3'
miRNA:   3'- caaGUCGCCG--UCUAGCAGGU--ACC-ACU- -5'
30191 5' -53.6 NC_006273.1 + 161490 0.66 0.980129
Target:  5'- --aCAGCGGCAG-UgGUCCAUcucuGUGGc -3'
miRNA:   3'- caaGUCGCCGUCuAgCAGGUAc---CACU- -5'
30191 5' -53.6 NC_006273.1 + 167221 0.67 0.976459
Target:  5'- -gUCAGCGGCcggugguggcugguaAGGUCGaUCaugggcggCGUGGUGAc -3'
miRNA:   3'- caAGUCGCCG---------------UCUAGC-AG--------GUACCACU- -5'
30191 5' -53.6 NC_006273.1 + 113510 0.67 0.96705
Target:  5'- --cCGGCGGCGGGUUG-CCcgGGg-- -3'
miRNA:   3'- caaGUCGCCGUCUAGCaGGuaCCacu -5'
30191 5' -53.6 NC_006273.1 + 132902 0.68 0.952907
Target:  5'- -cUCGGCGGC-GcgCGcCC-UGGUGAa -3'
miRNA:   3'- caAGUCGCCGuCuaGCaGGuACCACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.