Results 21 - 29 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
30191 | 5' | -53.6 | NC_006273.1 | + | 102315 | 0.66 | 0.985838 |
Target: 5'- ----cGCgGGCAGGUCGUgCGgcgGGUGGu -3' miRNA: 3'- caaguCG-CCGUCUAGCAgGUa--CCACU- -5' |
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30191 | 5' | -53.6 | NC_006273.1 | + | 208249 | 0.66 | 0.985838 |
Target: 5'- --gCAGCGGCGG---GUCCAUgaggcgGGUGAu -3' miRNA: 3'- caaGUCGCCGUCuagCAGGUA------CCACU- -5' |
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30191 | 5' | -53.6 | NC_006273.1 | + | 90479 | 0.66 | 0.985838 |
Target: 5'- -gUCAGCGcGCGGAUCaGaUCGcGGUGAu -3' miRNA: 3'- caAGUCGC-CGUCUAG-CaGGUaCCACU- -5' |
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30191 | 5' | -53.6 | NC_006273.1 | + | 47252 | 0.66 | 0.987431 |
Target: 5'- ----cGCGGCAGAcuuUCGUCaCGcUGGUGc -3' miRNA: 3'- caaguCGCCGUCU---AGCAG-GU-ACCACu -5' |
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30191 | 5' | -53.6 | NC_006273.1 | + | 102139 | 0.66 | 0.987431 |
Target: 5'- --gCAGCGGCAGuggCG-CCGUcgccaccguacaGGUGAu -3' miRNA: 3'- caaGUCGCCGUCua-GCaGGUA------------CCACU- -5' |
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30191 | 5' | -53.6 | NC_006273.1 | + | 144426 | 0.66 | 0.987431 |
Target: 5'- --gCGGCGGCGGAcgGUUCG-GGUGGc -3' miRNA: 3'- caaGUCGCCGUCUagCAGGUaCCACU- -5' |
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30191 | 5' | -53.6 | NC_006273.1 | + | 73766 | 0.66 | 0.988602 |
Target: 5'- --gCAGCGGCGccgccagcggCGaCCAUGGUGGg -3' miRNA: 3'- caaGUCGCCGUcua-------GCaGGUACCACU- -5' |
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30191 | 5' | -53.6 | NC_006273.1 | + | 114081 | 0.66 | 0.988881 |
Target: 5'- cGUUCGGCGagaGCGGG-CGgCgGUGGUGGg -3' miRNA: 3'- -CAAGUCGC---CGUCUaGCaGgUACCACU- -5' |
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30191 | 5' | -53.6 | NC_006273.1 | + | 140693 | 0.66 | 0.988881 |
Target: 5'- --aCGGCGGguGGUgGUggUgGUGGUGGa -3' miRNA: 3'- caaGUCGCCguCUAgCA--GgUACCACU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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