miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30191 5' -53.6 NC_006273.1 + 33953 0.72 0.835925
Target:  5'- ---aGGUGGCGGAUCG-CCGgcaGGUGAa -3'
miRNA:   3'- caagUCGCCGUCUAGCaGGUa--CCACU- -5'
30191 5' -53.6 NC_006273.1 + 44643 0.66 0.984096
Target:  5'- cGUUCGGCGGCAGcugguggCGUUCugccUGGaGAa -3'
miRNA:   3'- -CAAGUCGCCGUCua-----GCAGGu---ACCaCU- -5'
30191 5' -53.6 NC_006273.1 + 47252 0.66 0.987431
Target:  5'- ----cGCGGCAGAcuuUCGUCaCGcUGGUGc -3'
miRNA:   3'- caaguCGCCGUCU---AGCAG-GU-ACCACu -5'
30191 5' -53.6 NC_006273.1 + 49148 0.7 0.901512
Target:  5'- --cCAGaCGGUAGAcggCGUCCAUGGcGGg -3'
miRNA:   3'- caaGUC-GCCGUCUa--GCAGGUACCaCU- -5'
30191 5' -53.6 NC_006273.1 + 50053 0.69 0.919393
Target:  5'- -aUCAGCGugucccGUAGGUCGUCCAUGacgGAc -3'
miRNA:   3'- caAGUCGC------CGUCUAGCAGGUACca-CU- -5'
30191 5' -53.6 NC_006273.1 + 73766 0.66 0.988602
Target:  5'- --gCAGCGGCGccgccagcggCGaCCAUGGUGGg -3'
miRNA:   3'- caaGUCGCCGUcua-------GCaGGUACCACU- -5'
30191 5' -53.6 NC_006273.1 + 74993 0.69 0.921618
Target:  5'- -aUCAGCGGCGccGAUCG-CCAUGaauccgaguacccacGUGAg -3'
miRNA:   3'- caAGUCGCCGU--CUAGCaGGUAC---------------CACU- -5'
30191 5' -53.6 NC_006273.1 + 80061 0.66 0.984096
Target:  5'- -aUC-GCGGCAGGcgcacUCGUCCAgcagcgaGGUGu -3'
miRNA:   3'- caAGuCGCCGUCU-----AGCAGGUa------CCACu -5'
30191 5' -53.6 NC_006273.1 + 89293 0.66 0.985838
Target:  5'- ---aGGCGGCGGGcuuuuUUGUCCcgggGGUGGg -3'
miRNA:   3'- caagUCGCCGUCU-----AGCAGGua--CCACU- -5'
30191 5' -53.6 NC_006273.1 + 90262 0.71 0.872306
Target:  5'- -aUCGGCGGCGGcgaAUCGcCCgggcugccccgcagGUGGUGAu -3'
miRNA:   3'- caAGUCGCCGUC---UAGCaGG--------------UACCACU- -5'
30191 5' -53.6 NC_006273.1 + 90479 0.66 0.985838
Target:  5'- -gUCAGCGcGCGGAUCaGaUCGcGGUGAu -3'
miRNA:   3'- caAGUCGC-CGUCUAG-CaGGUaCCACU- -5'
30191 5' -53.6 NC_006273.1 + 102139 0.66 0.987431
Target:  5'- --gCAGCGGCAGuggCG-CCGUcgccaccguacaGGUGAu -3'
miRNA:   3'- caaGUCGCCGUCua-GCaGGUA------------CCACU- -5'
30191 5' -53.6 NC_006273.1 + 102315 0.66 0.985838
Target:  5'- ----cGCgGGCAGGUCGUgCGgcgGGUGGu -3'
miRNA:   3'- caaguCG-CCGUCUAGCAgGUa--CCACU- -5'
30191 5' -53.6 NC_006273.1 + 102477 0.7 0.907705
Target:  5'- --gUAG-GGCAGAcguacagagCGUCCAUGGUGGu -3'
miRNA:   3'- caaGUCgCCGUCUa--------GCAGGUACCACU- -5'
30191 5' -53.6 NC_006273.1 + 105941 0.66 0.982195
Target:  5'- -gUgGGCGGCAcGAUCaucuGUCCuagggGGUGAc -3'
miRNA:   3'- caAgUCGCCGU-CUAG----CAGGua---CCACU- -5'
30191 5' -53.6 NC_006273.1 + 111360 0.7 0.895089
Target:  5'- gGUUCAGCGGCGuGA---UCCAggUGGUGGu -3'
miRNA:   3'- -CAAGUCGCCGU-CUagcAGGU--ACCACU- -5'
30191 5' -53.6 NC_006273.1 + 113510 0.67 0.96705
Target:  5'- --cCGGCGGCGGGUUG-CCcgGGg-- -3'
miRNA:   3'- caaGUCGCCGUCUAGCaGGuaCCacu -5'
30191 5' -53.6 NC_006273.1 + 114081 0.66 0.988881
Target:  5'- cGUUCGGCGagaGCGGG-CGgCgGUGGUGGg -3'
miRNA:   3'- -CAAGUCGC---CGUCUaGCaGgUACCACU- -5'
30191 5' -53.6 NC_006273.1 + 132902 0.68 0.952907
Target:  5'- -cUCGGCGGC-GcgCGcCC-UGGUGAa -3'
miRNA:   3'- caAGUCGCCGuCuaGCaGGuACCACU- -5'
30191 5' -53.6 NC_006273.1 + 140693 0.66 0.988881
Target:  5'- --aCGGCGGguGGUgGUggUgGUGGUGGa -3'
miRNA:   3'- caaGUCGCCguCUAgCA--GgUACCACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.