miRNA display CGI


Results 1 - 20 of 29 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30191 5' -53.6 NC_006273.1 + 220172 0.66 0.980129
Target:  5'- --gUAGUGGUugGGGUCGUCCAucUGGaUGGc -3'
miRNA:   3'- caaGUCGCCG--UCUAGCAGGU--ACC-ACU- -5'
30191 5' -53.6 NC_006273.1 + 208249 0.66 0.985838
Target:  5'- --gCAGCGGCGG---GUCCAUgaggcgGGUGAu -3'
miRNA:   3'- caaGUCGCCGUCuagCAGGUA------CCACU- -5'
30191 5' -53.6 NC_006273.1 + 188395 0.66 0.985838
Target:  5'- -cUCGGCGcaCAGAuccaccgccUCGaCCGUGGUGAa -3'
miRNA:   3'- caAGUCGCc-GUCU---------AGCaGGUACCACU- -5'
30191 5' -53.6 NC_006273.1 + 187741 1.09 0.007163
Target:  5'- cGUUCAGCGGCAGAUCGUCCAUGGUGAc -3'
miRNA:   3'- -CAAGUCGCCGUCUAGCAGGUACCACU- -5'
30191 5' -53.6 NC_006273.1 + 167221 0.67 0.976459
Target:  5'- -gUCAGCGGCcggugguggcugguaAGGUCGaUCaugggcggCGUGGUGAc -3'
miRNA:   3'- caAGUCGCCG---------------UCUAGC-AG--------GUACCACU- -5'
30191 5' -53.6 NC_006273.1 + 164967 0.71 0.881567
Target:  5'- --gCAGCGGCGG---GUCCAgcUGGUGAc -3'
miRNA:   3'- caaGUCGCCGUCuagCAGGU--ACCACU- -5'
30191 5' -53.6 NC_006273.1 + 161490 0.66 0.980129
Target:  5'- --aCAGCGGCAG-UgGUCCAUcucuGUGGc -3'
miRNA:   3'- caaGUCGCCGUCuAgCAGGUAc---CACU- -5'
30191 5' -53.6 NC_006273.1 + 160137 0.66 0.984096
Target:  5'- --gCGGCGGcCAGcgcuUCGUCCAUaGGUa- -3'
miRNA:   3'- caaGUCGCC-GUCu---AGCAGGUA-CCAcu -5'
30191 5' -53.6 NC_006273.1 + 144426 0.66 0.987431
Target:  5'- --gCGGCGGCGGAcgGUUCG-GGUGGc -3'
miRNA:   3'- caaGUCGCCGUCUagCAGGUaCCACU- -5'
30191 5' -53.6 NC_006273.1 + 140693 0.66 0.988881
Target:  5'- --aCGGCGGguGGUgGUggUgGUGGUGGa -3'
miRNA:   3'- caaGUCGCCguCUAgCA--GgUACCACU- -5'
30191 5' -53.6 NC_006273.1 + 132902 0.68 0.952907
Target:  5'- -cUCGGCGGC-GcgCGcCC-UGGUGAa -3'
miRNA:   3'- caAGUCGCCGuCuaGCaGGuACCACU- -5'
30191 5' -53.6 NC_006273.1 + 114081 0.66 0.988881
Target:  5'- cGUUCGGCGagaGCGGG-CGgCgGUGGUGGg -3'
miRNA:   3'- -CAAGUCGC---CGUCUaGCaGgUACCACU- -5'
30191 5' -53.6 NC_006273.1 + 113510 0.67 0.96705
Target:  5'- --cCGGCGGCGGGUUG-CCcgGGg-- -3'
miRNA:   3'- caaGUCGCCGUCUAGCaGGuaCCacu -5'
30191 5' -53.6 NC_006273.1 + 111360 0.7 0.895089
Target:  5'- gGUUCAGCGGCGuGA---UCCAggUGGUGGu -3'
miRNA:   3'- -CAAGUCGCCGU-CUagcAGGU--ACCACU- -5'
30191 5' -53.6 NC_006273.1 + 105941 0.66 0.982195
Target:  5'- -gUgGGCGGCAcGAUCaucuGUCCuagggGGUGAc -3'
miRNA:   3'- caAgUCGCCGU-CUAG----CAGGua---CCACU- -5'
30191 5' -53.6 NC_006273.1 + 102477 0.7 0.907705
Target:  5'- --gUAG-GGCAGAcguacagagCGUCCAUGGUGGu -3'
miRNA:   3'- caaGUCgCCGUCUa--------GCAGGUACCACU- -5'
30191 5' -53.6 NC_006273.1 + 102315 0.66 0.985838
Target:  5'- ----cGCgGGCAGGUCGUgCGgcgGGUGGu -3'
miRNA:   3'- caaguCG-CCGUCUAGCAgGUa--CCACU- -5'
30191 5' -53.6 NC_006273.1 + 102139 0.66 0.987431
Target:  5'- --gCAGCGGCAGuggCG-CCGUcgccaccguacaGGUGAu -3'
miRNA:   3'- caaGUCGCCGUCua-GCaGGUA------------CCACU- -5'
30191 5' -53.6 NC_006273.1 + 90479 0.66 0.985838
Target:  5'- -gUCAGCGcGCGGAUCaGaUCGcGGUGAu -3'
miRNA:   3'- caAGUCGC-CGUCUAG-CaGGUaCCACU- -5'
30191 5' -53.6 NC_006273.1 + 90262 0.71 0.872306
Target:  5'- -aUCGGCGGCGGcgaAUCGcCCgggcugccccgcagGUGGUGAu -3'
miRNA:   3'- caAGUCGCCGUC---UAGCaGG--------------UACCACU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.