miRNA display CGI


Results 1 - 20 of 105 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30192 3' -56.9 NC_006273.1 + 118716 0.66 0.94389
Target:  5'- cUGAugGGUgagggucguggcgcgGGCacGGACCGCaACGUGc -3'
miRNA:   3'- -ACUugCCG---------------CCGaaCCUGGCGgUGUAC- -5'
30192 3' -56.9 NC_006273.1 + 72273 0.66 0.942572
Target:  5'- aGAGCGGCaGGUcgaugacgcugccgaUGaGGCCGCCGCGc- -3'
miRNA:   3'- aCUUGCCG-CCGa--------------AC-CUGGCGGUGUac -5'
30192 3' -56.9 NC_006273.1 + 22100 0.66 0.942128
Target:  5'- gGAAaacgaGGCGGCggaGGAaaCUGCCGCGg- -3'
miRNA:   3'- aCUUg----CCGCCGaa-CCU--GGCGGUGUac -5'
30192 3' -56.9 NC_006273.1 + 1346 0.66 0.941682
Target:  5'- aUGAACGGCgugGGCgcgacGGACCugcgucagcugucGCCGCGg- -3'
miRNA:   3'- -ACUUGCCG---CCGaa---CCUGG-------------CGGUGUac -5'
30192 3' -56.9 NC_006273.1 + 196239 0.66 0.941682
Target:  5'- aUGAACGGCgugGGCgcgacGGACCugcgucagcugucGCCGCGg- -3'
miRNA:   3'- -ACUUGCCG---CCGaa---CCUGG-------------CGGUGUac -5'
30192 3' -56.9 NC_006273.1 + 99583 0.66 0.939417
Target:  5'- aUGAugGGCuGCuUguggggaaccuggggUGGACUGCCGcCGUGa -3'
miRNA:   3'- -ACUugCCGcCG-A---------------ACCUGGCGGU-GUAC- -5'
30192 3' -56.9 NC_006273.1 + 94850 0.66 0.937565
Target:  5'- gUGGACGGUGGUggGGACgggcgaCGCCcCGg- -3'
miRNA:   3'- -ACUUGCCGCCGaaCCUG------GCGGuGUac -5'
30192 3' -56.9 NC_006273.1 + 110866 0.66 0.937565
Target:  5'- aUGGGCGGUGGCacaguggUGGGCUGuUCACc-- -3'
miRNA:   3'- -ACUUGCCGCCGa------ACCUGGC-GGUGuac -5'
30192 3' -56.9 NC_006273.1 + 43911 0.66 0.937565
Target:  5'- aGGGCGGCGGCgccGACUuCCACc-- -3'
miRNA:   3'- aCUUGCCGCCGaacCUGGcGGUGuac -5'
30192 3' -56.9 NC_006273.1 + 131154 0.66 0.93278
Target:  5'- cGAacACGGCGGCgaGGugCGCgaauucaagcacCugGUGu -3'
miRNA:   3'- aCU--UGCCGCCGaaCCugGCG------------GugUAC- -5'
30192 3' -56.9 NC_006273.1 + 84833 0.66 0.93278
Target:  5'- gUGGACGGUuggcccgugGGCcUGGGCCuGCUagACGUGc -3'
miRNA:   3'- -ACUUGCCG---------CCGaACCUGG-CGG--UGUAC- -5'
30192 3' -56.9 NC_006273.1 + 136133 0.66 0.93278
Target:  5'- cGAGCGGCGGaCUUGGcaGCgGgCCuguuuuCGUGu -3'
miRNA:   3'- aCUUGCCGCC-GAACC--UGgC-GGu-----GUAC- -5'
30192 3' -56.9 NC_006273.1 + 107397 0.66 0.93278
Target:  5'- -cAugGGCGGUgc-GGCgCGCCGCAUa -3'
miRNA:   3'- acUugCCGCCGaacCUG-GCGGUGUAc -5'
30192 3' -56.9 NC_006273.1 + 139296 0.66 0.93278
Target:  5'- gGAACaGGCGGCgaccgcGGACuCGCCuCGg- -3'
miRNA:   3'- aCUUG-CCGCCGaa----CCUG-GCGGuGUac -5'
30192 3' -56.9 NC_006273.1 + 159978 0.66 0.93278
Target:  5'- gUGAguACGGUGGaUUGcGuGCCGCCGCAc- -3'
miRNA:   3'- -ACU--UGCCGCCgAAC-C-UGGCGGUGUac -5'
30192 3' -56.9 NC_006273.1 + 203986 0.66 0.927769
Target:  5'- gUGAGCcGCGGCgauucGGGCgUGCCGCGa- -3'
miRNA:   3'- -ACUUGcCGCCGaa---CCUG-GCGGUGUac -5'
30192 3' -56.9 NC_006273.1 + 189501 0.66 0.927769
Target:  5'- ----gGGCGGCcc-GGCCGCCGCGc- -3'
miRNA:   3'- acuugCCGCCGaacCUGGCGGUGUac -5'
30192 3' -56.9 NC_006273.1 + 141229 0.66 0.927769
Target:  5'- aGGugGGCGGagcGGuaauuuuccACCGCCGCGa- -3'
miRNA:   3'- aCUugCCGCCgaaCC---------UGGCGGUGUac -5'
30192 3' -56.9 NC_006273.1 + 207469 0.66 0.927769
Target:  5'- aUGggUGGUGGCUacgagccACCGCCACc-- -3'
miRNA:   3'- -ACuuGCCGCCGAacc----UGGCGGUGuac -5'
30192 3' -56.9 NC_006273.1 + 163392 0.66 0.927769
Target:  5'- -cAGCaGCGucGCgaGGACCGCCGCAg- -3'
miRNA:   3'- acUUGcCGC--CGaaCCUGGCGGUGUac -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.