Results 1 - 20 of 105 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
30192 | 3' | -56.9 | NC_006273.1 | + | 207469 | 0.66 | 0.927769 |
Target: 5'- aUGggUGGUGGCUacgagccACCGCCACc-- -3' miRNA: 3'- -ACuuGCCGCCGAacc----UGGCGGUGuac -5' |
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30192 | 3' | -56.9 | NC_006273.1 | + | 73870 | 0.66 | 0.922533 |
Target: 5'- gUGAGC-GCGGCcgacaugcGGGCgCGCCACAg- -3' miRNA: 3'- -ACUUGcCGCCGaa------CCUG-GCGGUGUac -5' |
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30192 | 3' | -56.9 | NC_006273.1 | + | 124107 | 0.66 | 0.922533 |
Target: 5'- gUGAGCGGCGGCgucGACagaGCUcgGCGUu -3' miRNA: 3'- -ACUUGCCGCCGaacCUGg--CGG--UGUAc -5' |
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30192 | 3' | -56.9 | NC_006273.1 | + | 189060 | 0.66 | 0.922533 |
Target: 5'- cGGAcCGGCGGCguaGGCgGCCGCu-- -3' miRNA: 3'- aCUU-GCCGCCGaacCUGgCGGUGuac -5' |
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30192 | 3' | -56.9 | NC_006273.1 | + | 141229 | 0.66 | 0.927769 |
Target: 5'- aGGugGGCGGagcGGuaauuuuccACCGCCGCGa- -3' miRNA: 3'- aCUugCCGCCgaaCC---------UGGCGGUGUac -5' |
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30192 | 3' | -56.9 | NC_006273.1 | + | 83691 | 0.66 | 0.917073 |
Target: 5'- ---cUGGCGGUggaGGAcaaCCGCCugGUGg -3' miRNA: 3'- acuuGCCGCCGaa-CCU---GGCGGugUAC- -5' |
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30192 | 3' | -56.9 | NC_006273.1 | + | 160809 | 0.66 | 0.917073 |
Target: 5'- uUGGGCGGCGGaUUGGG--GCgGCAUGc -3' miRNA: 3'- -ACUUGCCGCCgAACCUggCGgUGUAC- -5' |
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30192 | 3' | -56.9 | NC_006273.1 | + | 14951 | 0.66 | 0.917073 |
Target: 5'- aUGAACGGaugGGCUgGGGuuGCUugAUa -3' miRNA: 3'- -ACUUGCCg--CCGAaCCUggCGGugUAc -5' |
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30192 | 3' | -56.9 | NC_006273.1 | + | 94850 | 0.66 | 0.937565 |
Target: 5'- gUGGACGGUGGUggGGACgggcgaCGCCcCGg- -3' miRNA: 3'- -ACUUGCCGCCGaaCCUG------GCGGuGUac -5' |
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30192 | 3' | -56.9 | NC_006273.1 | + | 203986 | 0.66 | 0.927769 |
Target: 5'- gUGAGCcGCGGCgauucGGGCgUGCCGCGa- -3' miRNA: 3'- -ACUUGcCGCCGaa---CCUG-GCGGUGUac -5' |
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30192 | 3' | -56.9 | NC_006273.1 | + | 1346 | 0.66 | 0.941682 |
Target: 5'- aUGAACGGCgugGGCgcgacGGACCugcgucagcugucGCCGCGg- -3' miRNA: 3'- -ACUUGCCG---CCGaa---CCUGG-------------CGGUGUac -5' |
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30192 | 3' | -56.9 | NC_006273.1 | + | 93010 | 0.66 | 0.917073 |
Target: 5'- cUGAGCGGCugcggaacgcGGCccGGGCCcgauGCCACGg- -3' miRNA: 3'- -ACUUGCCG----------CCGaaCCUGG----CGGUGUac -5' |
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30192 | 3' | -56.9 | NC_006273.1 | + | 22100 | 0.66 | 0.942128 |
Target: 5'- gGAAaacgaGGCGGCggaGGAaaCUGCCGCGg- -3' miRNA: 3'- aCUUg----CCGCCGaa-CCU--GGCGGUGUac -5' |
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30192 | 3' | -56.9 | NC_006273.1 | + | 110866 | 0.66 | 0.937565 |
Target: 5'- aUGGGCGGUGGCacaguggUGGGCUGuUCACc-- -3' miRNA: 3'- -ACUUGCCGCCGa------ACCUGGC-GGUGuac -5' |
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30192 | 3' | -56.9 | NC_006273.1 | + | 136133 | 0.66 | 0.93278 |
Target: 5'- cGAGCGGCGGaCUUGGcaGCgGgCCuguuuuCGUGu -3' miRNA: 3'- aCUUGCCGCC-GAACC--UGgC-GGu-----GUAC- -5' |
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30192 | 3' | -56.9 | NC_006273.1 | + | 118716 | 0.66 | 0.94389 |
Target: 5'- cUGAugGGUgagggucguggcgcgGGCacGGACCGCaACGUGc -3' miRNA: 3'- -ACUugCCG---------------CCGaaCCUGGCGgUGUAC- -5' |
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30192 | 3' | -56.9 | NC_006273.1 | + | 163392 | 0.66 | 0.927769 |
Target: 5'- -cAGCaGCGucGCgaGGACCGCCGCAg- -3' miRNA: 3'- acUUGcCGC--CGaaCCUGGCGGUGUac -5' |
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30192 | 3' | -56.9 | NC_006273.1 | + | 189501 | 0.66 | 0.927769 |
Target: 5'- ----gGGCGGCcc-GGCCGCCGCGc- -3' miRNA: 3'- acuugCCGCCGaacCUGGCGGUGUac -5' |
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30192 | 3' | -56.9 | NC_006273.1 | + | 196239 | 0.66 | 0.941682 |
Target: 5'- aUGAACGGCgugGGCgcgacGGACCugcgucagcugucGCCGCGg- -3' miRNA: 3'- -ACUUGCCG---CCGaa---CCUGG-------------CGGUGUac -5' |
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30192 | 3' | -56.9 | NC_006273.1 | + | 72273 | 0.66 | 0.942572 |
Target: 5'- aGAGCGGCaGGUcgaugacgcugccgaUGaGGCCGCCGCGc- -3' miRNA: 3'- aCUUGCCG-CCGa--------------AC-CUGGCGGUGUac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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