miRNA display CGI


Results 1 - 20 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30192 3' -56.9 NC_006273.1 + 207469 0.66 0.927769
Target:  5'- aUGggUGGUGGCUacgagccACCGCCACc-- -3'
miRNA:   3'- -ACuuGCCGCCGAacc----UGGCGGUGuac -5'
30192 3' -56.9 NC_006273.1 + 73870 0.66 0.922533
Target:  5'- gUGAGC-GCGGCcgacaugcGGGCgCGCCACAg- -3'
miRNA:   3'- -ACUUGcCGCCGaa------CCUG-GCGGUGUac -5'
30192 3' -56.9 NC_006273.1 + 124107 0.66 0.922533
Target:  5'- gUGAGCGGCGGCgucGACagaGCUcgGCGUu -3'
miRNA:   3'- -ACUUGCCGCCGaacCUGg--CGG--UGUAc -5'
30192 3' -56.9 NC_006273.1 + 189060 0.66 0.922533
Target:  5'- cGGAcCGGCGGCguaGGCgGCCGCu-- -3'
miRNA:   3'- aCUU-GCCGCCGaacCUGgCGGUGuac -5'
30192 3' -56.9 NC_006273.1 + 141229 0.66 0.927769
Target:  5'- aGGugGGCGGagcGGuaauuuuccACCGCCGCGa- -3'
miRNA:   3'- aCUugCCGCCgaaCC---------UGGCGGUGUac -5'
30192 3' -56.9 NC_006273.1 + 83691 0.66 0.917073
Target:  5'- ---cUGGCGGUggaGGAcaaCCGCCugGUGg -3'
miRNA:   3'- acuuGCCGCCGaa-CCU---GGCGGugUAC- -5'
30192 3' -56.9 NC_006273.1 + 160809 0.66 0.917073
Target:  5'- uUGGGCGGCGGaUUGGG--GCgGCAUGc -3'
miRNA:   3'- -ACUUGCCGCCgAACCUggCGgUGUAC- -5'
30192 3' -56.9 NC_006273.1 + 14951 0.66 0.917073
Target:  5'- aUGAACGGaugGGCUgGGGuuGCUugAUa -3'
miRNA:   3'- -ACUUGCCg--CCGAaCCUggCGGugUAc -5'
30192 3' -56.9 NC_006273.1 + 94850 0.66 0.937565
Target:  5'- gUGGACGGUGGUggGGACgggcgaCGCCcCGg- -3'
miRNA:   3'- -ACUUGCCGCCGaaCCUG------GCGGuGUac -5'
30192 3' -56.9 NC_006273.1 + 203986 0.66 0.927769
Target:  5'- gUGAGCcGCGGCgauucGGGCgUGCCGCGa- -3'
miRNA:   3'- -ACUUGcCGCCGaa---CCUG-GCGGUGUac -5'
30192 3' -56.9 NC_006273.1 + 1346 0.66 0.941682
Target:  5'- aUGAACGGCgugGGCgcgacGGACCugcgucagcugucGCCGCGg- -3'
miRNA:   3'- -ACUUGCCG---CCGaa---CCUGG-------------CGGUGUac -5'
30192 3' -56.9 NC_006273.1 + 93010 0.66 0.917073
Target:  5'- cUGAGCGGCugcggaacgcGGCccGGGCCcgauGCCACGg- -3'
miRNA:   3'- -ACUUGCCG----------CCGaaCCUGG----CGGUGUac -5'
30192 3' -56.9 NC_006273.1 + 22100 0.66 0.942128
Target:  5'- gGAAaacgaGGCGGCggaGGAaaCUGCCGCGg- -3'
miRNA:   3'- aCUUg----CCGCCGaa-CCU--GGCGGUGUac -5'
30192 3' -56.9 NC_006273.1 + 110866 0.66 0.937565
Target:  5'- aUGGGCGGUGGCacaguggUGGGCUGuUCACc-- -3'
miRNA:   3'- -ACUUGCCGCCGa------ACCUGGC-GGUGuac -5'
30192 3' -56.9 NC_006273.1 + 136133 0.66 0.93278
Target:  5'- cGAGCGGCGGaCUUGGcaGCgGgCCuguuuuCGUGu -3'
miRNA:   3'- aCUUGCCGCC-GAACC--UGgC-GGu-----GUAC- -5'
30192 3' -56.9 NC_006273.1 + 118716 0.66 0.94389
Target:  5'- cUGAugGGUgagggucguggcgcgGGCacGGACCGCaACGUGc -3'
miRNA:   3'- -ACUugCCG---------------CCGaaCCUGGCGgUGUAC- -5'
30192 3' -56.9 NC_006273.1 + 163392 0.66 0.927769
Target:  5'- -cAGCaGCGucGCgaGGACCGCCGCAg- -3'
miRNA:   3'- acUUGcCGC--CGaaCCUGGCGGUGUac -5'
30192 3' -56.9 NC_006273.1 + 189501 0.66 0.927769
Target:  5'- ----gGGCGGCcc-GGCCGCCGCGc- -3'
miRNA:   3'- acuugCCGCCGaacCUGGCGGUGUac -5'
30192 3' -56.9 NC_006273.1 + 196239 0.66 0.941682
Target:  5'- aUGAACGGCgugGGCgcgacGGACCugcgucagcugucGCCGCGg- -3'
miRNA:   3'- -ACUUGCCG---CCGaa---CCUGG-------------CGGUGUac -5'
30192 3' -56.9 NC_006273.1 + 72273 0.66 0.942572
Target:  5'- aGAGCGGCaGGUcgaugacgcugccgaUGaGGCCGCCGCGc- -3'
miRNA:   3'- aCUUGCCG-CCGa--------------AC-CUGGCGGUGUac -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.