miRNA display CGI


Results 21 - 40 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30192 3' -56.9 NC_006273.1 + 110866 0.66 0.937565
Target:  5'- aUGGGCGGUGGCacaguggUGGGCUGuUCACc-- -3'
miRNA:   3'- -ACUUGCCGCCGa------ACCUGGC-GGUGuac -5'
30192 3' -56.9 NC_006273.1 + 94850 0.66 0.937565
Target:  5'- gUGGACGGUGGUggGGACgggcgaCGCCcCGg- -3'
miRNA:   3'- -ACUUGCCGCCGaaCCUG------GCGGuGUac -5'
30192 3' -56.9 NC_006273.1 + 136133 0.66 0.93278
Target:  5'- cGAGCGGCGGaCUUGGcaGCgGgCCuguuuuCGUGu -3'
miRNA:   3'- aCUUGCCGCC-GAACC--UGgC-GGu-----GUAC- -5'
30192 3' -56.9 NC_006273.1 + 163392 0.66 0.927769
Target:  5'- -cAGCaGCGucGCgaGGACCGCCGCAg- -3'
miRNA:   3'- acUUGcCGC--CGaaCCUGGCGGUGUac -5'
30192 3' -56.9 NC_006273.1 + 72273 0.66 0.942572
Target:  5'- aGAGCGGCaGGUcgaugacgcugccgaUGaGGCCGCCGCGc- -3'
miRNA:   3'- aCUUGCCG-CCGa--------------AC-CUGGCGGUGUac -5'
30192 3' -56.9 NC_006273.1 + 131154 0.66 0.93278
Target:  5'- cGAacACGGCGGCgaGGugCGCgaauucaagcacCugGUGu -3'
miRNA:   3'- aCU--UGCCGCCGaaCCugGCG------------GugUAC- -5'
30192 3' -56.9 NC_006273.1 + 139296 0.66 0.93278
Target:  5'- gGAACaGGCGGCgaccgcGGACuCGCCuCGg- -3'
miRNA:   3'- aCUUG-CCGCCGaa----CCUG-GCGGuGUac -5'
30192 3' -56.9 NC_006273.1 + 119454 0.67 0.904878
Target:  5'- uUGAGCGGCGGaCUgcuGACgcgcuuugugcagCGCCACAc- -3'
miRNA:   3'- -ACUUGCCGCC-GAac-CUG-------------GCGGUGUac -5'
30192 3' -56.9 NC_006273.1 + 87563 0.67 0.905481
Target:  5'- cGAACGugugaagccGCGGCUcGGcacgGCCGCCACc-- -3'
miRNA:   3'- aCUUGC---------CGCCGAaCC----UGGCGGUGuac -5'
30192 3' -56.9 NC_006273.1 + 96266 0.67 0.899353
Target:  5'- -cGACGGCGGCUUcaGuACCGCCGuCGa- -3'
miRNA:   3'- acUUGCCGCCGAA--CcUGGCGGU-GUac -5'
30192 3' -56.9 NC_006273.1 + 93579 0.67 0.886446
Target:  5'- uUGAGCGGCGGCggccugcgcGGccuguACCGCgGCuUGa -3'
miRNA:   3'- -ACUUGCCGCCGaa-------CC-----UGGCGgUGuAC- -5'
30192 3' -56.9 NC_006273.1 + 82267 0.67 0.910807
Target:  5'- aGGAUcaaGGCgucgucguacuugGGCgUGGGCCGCgGCGUGg -3'
miRNA:   3'- aCUUG---CCG-------------CCGaACCUGGCGgUGUAC- -5'
30192 3' -56.9 NC_006273.1 + 140337 0.67 0.911388
Target:  5'- aGAGcCGGCGGCUaggccgagGGACCcccgGUCACGa- -3'
miRNA:   3'- aCUU-GCCGCCGAa-------CCUGG----CGGUGUac -5'
30192 3' -56.9 NC_006273.1 + 61926 0.67 0.911388
Target:  5'- -cGACGGCGGCggagacgaGGACCGguugccguucuaCCACAa- -3'
miRNA:   3'- acUUGCCGCCGaa------CCUGGC------------GGUGUac -5'
30192 3' -56.9 NC_006273.1 + 166665 0.67 0.911388
Target:  5'- -uGACaGCGGCaagUGGGgCGCCGCGa- -3'
miRNA:   3'- acUUGcCGCCGa--ACCUgGCGGUGUac -5'
30192 3' -56.9 NC_006273.1 + 70680 0.67 0.911388
Target:  5'- -uGGCGGCGGUggaGGGCgCGCgGCAa- -3'
miRNA:   3'- acUUGCCGCCGaa-CCUG-GCGgUGUac -5'
30192 3' -56.9 NC_006273.1 + 133754 0.67 0.913689
Target:  5'- -cGACGGCGGCcaUGGagcugcacucacgcgGCCGUCACGa- -3'
miRNA:   3'- acUUGCCGCCGa-ACC---------------UGGCGGUGUac -5'
30192 3' -56.9 NC_006273.1 + 1722 0.67 0.899353
Target:  5'- -cGGCGGUGGCgacUGGGCCGacagCGCAa- -3'
miRNA:   3'- acUUGCCGCCGa--ACCUGGCg---GUGUac -5'
30192 3' -56.9 NC_006273.1 + 14091 0.67 0.899353
Target:  5'- gUGAACcgcucaGUGGCUcGGACCGCCGg--- -3'
miRNA:   3'- -ACUUGc-----CGCCGAaCCUGGCGGUguac -5'
30192 3' -56.9 NC_006273.1 + 90264 0.67 0.899353
Target:  5'- -cGGCGGCGGCgaaucgcccGGGCUGCCccGCAg- -3'
miRNA:   3'- acUUGCCGCCGaa-------CCUGGCGG--UGUac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.