Results 1 - 20 of 105 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30192 | 3' | -56.9 | NC_006273.1 | + | 187899 | 1.08 | 0.004371 |
Target: 5'- uUGAACGGCGGCUUGGACCGCCACAUGu -3' miRNA: 3'- -ACUUGCCGCCGAACCUGGCGGUGUAC- -5' |
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30192 | 3' | -56.9 | NC_006273.1 | + | 164547 | 0.78 | 0.349997 |
Target: 5'- aGGGCGGCGGCggucGGcCCGCCAgCGUGc -3' miRNA: 3'- aCUUGCCGCCGaa--CCuGGCGGU-GUAC- -5' |
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30192 | 3' | -56.9 | NC_006273.1 | + | 38597 | 0.78 | 0.349997 |
Target: 5'- aGAGCGccuGCGGCUgu-GCCGCCACAUGg -3' miRNA: 3'- aCUUGC---CGCCGAaccUGGCGGUGUAC- -5' |
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30192 | 3' | -56.9 | NC_006273.1 | + | 67721 | 0.78 | 0.342497 |
Target: 5'- cGAACGGCGGCcgaccccgccgUUGcGGCCGCCGCu-- -3' miRNA: 3'- aCUUGCCGCCG-----------AAC-CUGGCGGUGuac -5' |
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30192 | 3' | -56.9 | NC_006273.1 | + | 227057 | 0.77 | 0.378748 |
Target: 5'- cGGcACGGCGGCUcuuggauucggcauUGGugCGCCGCGUc -3' miRNA: 3'- aCU-UGCCGCCGA--------------ACCugGCGGUGUAc -5' |
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30192 | 3' | -56.9 | NC_006273.1 | + | 7694 | 0.77 | 0.381147 |
Target: 5'- aUGGGCGGCGGCggcagUGG-CCGCgGCAg- -3' miRNA: 3'- -ACUUGCCGCCGa----ACCuGGCGgUGUac -5' |
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30192 | 3' | -56.9 | NC_006273.1 | + | 116975 | 0.74 | 0.532002 |
Target: 5'- gGAagcuGCGGCGGCUUGGGCagcaGCgGCGg- -3' miRNA: 3'- aCU----UGCCGCCGAACCUGg---CGgUGUac -5' |
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30192 | 3' | -56.9 | NC_006273.1 | + | 197317 | 0.73 | 0.59048 |
Target: 5'- cGcGCGGCGGCUgcugcccgagcUGGACCGCgaGCAg- -3' miRNA: 3'- aCuUGCCGCCGA-----------ACCUGGCGg-UGUac -5' |
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30192 | 3' | -56.9 | NC_006273.1 | + | 2424 | 0.73 | 0.59048 |
Target: 5'- cGcGCGGCGGCUgcugcccgagcUGGACCGCgaGCAg- -3' miRNA: 3'- aCuUGCCGCCGA-----------ACCUGGCGg-UGUac -5' |
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30192 | 3' | -56.9 | NC_006273.1 | + | 221800 | 0.73 | 0.570809 |
Target: 5'- aGcACGGCGGCccGGGCCGCCcgGCGg- -3' miRNA: 3'- aCuUGCCGCCGaaCCUGGCGG--UGUac -5' |
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30192 | 3' | -56.9 | NC_006273.1 | + | 45891 | 0.72 | 0.649961 |
Target: 5'- aGcGCGGCGGCc-GGGCCGCCGa--- -3' miRNA: 3'- aCuUGCCGCCGaaCCUGGCGGUguac -5' |
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30192 | 3' | -56.9 | NC_006273.1 | + | 217943 | 0.72 | 0.630109 |
Target: 5'- ---cCGGCGGCguagUGGACCGCgGUAUGu -3' miRNA: 3'- acuuGCCGCCGa---ACCUGGCGgUGUAC- -5' |
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30192 | 3' | -56.9 | NC_006273.1 | + | 125045 | 0.72 | 0.65987 |
Target: 5'- aGAGCGGuCGaugucagauGC-UGGACCGCCGCAc- -3' miRNA: 3'- aCUUGCC-GC---------CGaACCUGGCGGUGUac -5' |
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30192 | 3' | -56.9 | NC_006273.1 | + | 122247 | 0.72 | 0.640038 |
Target: 5'- cUGAGCGGCGcGCccucUGcGGCCGCCGCc-- -3' miRNA: 3'- -ACUUGCCGC-CGa---AC-CUGGCGGUGuac -5' |
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30192 | 3' | -56.9 | NC_006273.1 | + | 86541 | 0.72 | 0.630109 |
Target: 5'- -uGACGGaCGGU--GGACCGCUAUAUGg -3' miRNA: 3'- acUUGCC-GCCGaaCCUGGCGGUGUAC- -5' |
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30192 | 3' | -56.9 | NC_006273.1 | + | 178844 | 0.72 | 0.679618 |
Target: 5'- gGAgGCGGCGGUUUGGAUCGCaACu-- -3' miRNA: 3'- aCU-UGCCGCCGAACCUGGCGgUGuac -5' |
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30192 | 3' | -56.9 | NC_006273.1 | + | 55459 | 0.71 | 0.718607 |
Target: 5'- cGGGCGGUGGCc--GGCaCGCCGCAUu -3' miRNA: 3'- aCUUGCCGCCGaacCUG-GCGGUGUAc -5' |
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30192 | 3' | -56.9 | NC_006273.1 | + | 80385 | 0.71 | 0.699219 |
Target: 5'- gGAGCGGCGGCcgUGG-CgGCgGCAg- -3' miRNA: 3'- aCUUGCCGCCGa-ACCuGgCGgUGUac -5' |
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30192 | 3' | -56.9 | NC_006273.1 | + | 177526 | 0.71 | 0.73677 |
Target: 5'- cGAAcCGGCGGCguugaacgUGGuccuuuuguugguGCCGCCGCGa- -3' miRNA: 3'- aCUU-GCCGCCGa-------ACC-------------UGGCGGUGUac -5' |
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30192 | 3' | -56.9 | NC_006273.1 | + | 167653 | 0.7 | 0.747147 |
Target: 5'- gUGAGCGGCGGCgcaacggcggGGucgGCCGCCGu--- -3' miRNA: 3'- -ACUUGCCGCCGaa--------CC---UGGCGGUguac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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