miRNA display CGI


Results 1 - 20 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30192 3' -56.9 NC_006273.1 + 187899 1.08 0.004371
Target:  5'- uUGAACGGCGGCUUGGACCGCCACAUGu -3'
miRNA:   3'- -ACUUGCCGCCGAACCUGGCGGUGUAC- -5'
30192 3' -56.9 NC_006273.1 + 67721 0.78 0.342497
Target:  5'- cGAACGGCGGCcgaccccgccgUUGcGGCCGCCGCu-- -3'
miRNA:   3'- aCUUGCCGCCG-----------AAC-CUGGCGGUGuac -5'
30192 3' -56.9 NC_006273.1 + 38597 0.78 0.349997
Target:  5'- aGAGCGccuGCGGCUgu-GCCGCCACAUGg -3'
miRNA:   3'- aCUUGC---CGCCGAaccUGGCGGUGUAC- -5'
30192 3' -56.9 NC_006273.1 + 164547 0.78 0.349997
Target:  5'- aGGGCGGCGGCggucGGcCCGCCAgCGUGc -3'
miRNA:   3'- aCUUGCCGCCGaa--CCuGGCGGU-GUAC- -5'
30192 3' -56.9 NC_006273.1 + 227057 0.77 0.378748
Target:  5'- cGGcACGGCGGCUcuuggauucggcauUGGugCGCCGCGUc -3'
miRNA:   3'- aCU-UGCCGCCGA--------------ACCugGCGGUGUAc -5'
30192 3' -56.9 NC_006273.1 + 7694 0.77 0.381147
Target:  5'- aUGGGCGGCGGCggcagUGG-CCGCgGCAg- -3'
miRNA:   3'- -ACUUGCCGCCGa----ACCuGGCGgUGUac -5'
30192 3' -56.9 NC_006273.1 + 116975 0.74 0.532002
Target:  5'- gGAagcuGCGGCGGCUUGGGCagcaGCgGCGg- -3'
miRNA:   3'- aCU----UGCCGCCGAACCUGg---CGgUGUac -5'
30192 3' -56.9 NC_006273.1 + 221800 0.73 0.570809
Target:  5'- aGcACGGCGGCccGGGCCGCCcgGCGg- -3'
miRNA:   3'- aCuUGCCGCCGaaCCUGGCGG--UGUac -5'
30192 3' -56.9 NC_006273.1 + 2424 0.73 0.59048
Target:  5'- cGcGCGGCGGCUgcugcccgagcUGGACCGCgaGCAg- -3'
miRNA:   3'- aCuUGCCGCCGA-----------ACCUGGCGg-UGUac -5'
30192 3' -56.9 NC_006273.1 + 197317 0.73 0.59048
Target:  5'- cGcGCGGCGGCUgcugcccgagcUGGACCGCgaGCAg- -3'
miRNA:   3'- aCuUGCCGCCGA-----------ACCUGGCGg-UGUac -5'
30192 3' -56.9 NC_006273.1 + 217943 0.72 0.630109
Target:  5'- ---cCGGCGGCguagUGGACCGCgGUAUGu -3'
miRNA:   3'- acuuGCCGCCGa---ACCUGGCGgUGUAC- -5'
30192 3' -56.9 NC_006273.1 + 86541 0.72 0.630109
Target:  5'- -uGACGGaCGGU--GGACCGCUAUAUGg -3'
miRNA:   3'- acUUGCC-GCCGaaCCUGGCGGUGUAC- -5'
30192 3' -56.9 NC_006273.1 + 122247 0.72 0.640038
Target:  5'- cUGAGCGGCGcGCccucUGcGGCCGCCGCc-- -3'
miRNA:   3'- -ACUUGCCGC-CGa---AC-CUGGCGGUGuac -5'
30192 3' -56.9 NC_006273.1 + 45891 0.72 0.649961
Target:  5'- aGcGCGGCGGCc-GGGCCGCCGa--- -3'
miRNA:   3'- aCuUGCCGCCGaaCCUGGCGGUguac -5'
30192 3' -56.9 NC_006273.1 + 125045 0.72 0.65987
Target:  5'- aGAGCGGuCGaugucagauGC-UGGACCGCCGCAc- -3'
miRNA:   3'- aCUUGCC-GC---------CGaACCUGGCGGUGUac -5'
30192 3' -56.9 NC_006273.1 + 178844 0.72 0.679618
Target:  5'- gGAgGCGGCGGUUUGGAUCGCaACu-- -3'
miRNA:   3'- aCU-UGCCGCCGAACCUGGCGgUGuac -5'
30192 3' -56.9 NC_006273.1 + 80385 0.71 0.699219
Target:  5'- gGAGCGGCGGCcgUGG-CgGCgGCAg- -3'
miRNA:   3'- aCUUGCCGCCGa-ACCuGgCGgUGUac -5'
30192 3' -56.9 NC_006273.1 + 55459 0.71 0.718607
Target:  5'- cGGGCGGUGGCc--GGCaCGCCGCAUu -3'
miRNA:   3'- aCUUGCCGCCGaacCUG-GCGGUGUAc -5'
30192 3' -56.9 NC_006273.1 + 177526 0.71 0.73677
Target:  5'- cGAAcCGGCGGCguugaacgUGGuccuuuuguugguGCCGCCGCGa- -3'
miRNA:   3'- aCUU-GCCGCCGa-------ACC-------------UGGCGGUGUac -5'
30192 3' -56.9 NC_006273.1 + 167653 0.7 0.747147
Target:  5'- gUGAGCGGCGGCgcaacggcggGGucgGCCGCCGu--- -3'
miRNA:   3'- -ACUUGCCGCCGaa--------CC---UGGCGGUguac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.