miRNA display CGI


Results 21 - 40 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30192 3' -56.9 NC_006273.1 + 167653 0.7 0.747147
Target:  5'- gUGAGCGGCGGCgcaacggcggGGucgGCCGCCGu--- -3'
miRNA:   3'- -ACUUGCCGCCGaa--------CC---UGGCGGUguac -5'
30192 3' -56.9 NC_006273.1 + 140720 0.7 0.756481
Target:  5'- gUGGugGCGGCGGCg-GGGCCGgCGCuUGu -3'
miRNA:   3'- -ACU--UGCCGCCGaaCCUGGCgGUGuAC- -5'
30192 3' -56.9 NC_006273.1 + 6442 0.7 0.774832
Target:  5'- cGAACccgGGCcuGCcacUGGACCGCCACGUa -3'
miRNA:   3'- aCUUG---CCGc-CGa--ACCUGGCGGUGUAc -5'
30192 3' -56.9 NC_006273.1 + 68021 0.7 0.783831
Target:  5'- aUGggUGGCGGa--GGACUGCCGgCAg- -3'
miRNA:   3'- -ACuuGCCGCCgaaCCUGGCGGU-GUac -5'
30192 3' -56.9 NC_006273.1 + 196994 0.7 0.783831
Target:  5'- cGcAGCGGCGGCgacGGACgGCgGCGg- -3'
miRNA:   3'- aC-UUGCCGCCGaa-CCUGgCGgUGUac -5'
30192 3' -56.9 NC_006273.1 + 197126 0.69 0.792702
Target:  5'- gGucCGGCGGCgucggGGACCguGCCGCGc- -3'
miRNA:   3'- aCuuGCCGCCGaa---CCUGG--CGGUGUac -5'
30192 3' -56.9 NC_006273.1 + 230529 0.69 0.792702
Target:  5'- aGAACGGCGGgaCUUa-GCCGCC-CGUGg -3'
miRNA:   3'- aCUUGCCGCC--GAAccUGGCGGuGUAC- -5'
30192 3' -56.9 NC_006273.1 + 2233 0.69 0.792702
Target:  5'- gGucCGGCGGCgucggGGACCguGCCGCGc- -3'
miRNA:   3'- aCuuGCCGCCGaa---CCUGG--CGGUGUac -5'
30192 3' -56.9 NC_006273.1 + 99515 0.69 0.801437
Target:  5'- gUGGcgGCGGCGGCUgcugcuguUGGGuuGCCGuCGUa -3'
miRNA:   3'- -ACU--UGCCGCCGA--------ACCUggCGGU-GUAc -5'
30192 3' -56.9 NC_006273.1 + 84099 0.69 0.801437
Target:  5'- cGAGCGGCGGCccaGGAaCGCUugAa- -3'
miRNA:   3'- aCUUGCCGCCGaa-CCUgGCGGugUac -5'
30192 3' -56.9 NC_006273.1 + 167435 0.69 0.801437
Target:  5'- aUGGACGGCGuGUUgcaGGGCCuGCUGCGUc -3'
miRNA:   3'- -ACUUGCCGC-CGAa--CCUGG-CGGUGUAc -5'
30192 3' -56.9 NC_006273.1 + 26647 0.69 0.809175
Target:  5'- cUGcAACGGCguGGCUUGGgaacACCGCCucagcucugugugGCGUGa -3'
miRNA:   3'- -AC-UUGCCG--CCGAACC----UGGCGG-------------UGUAC- -5'
30192 3' -56.9 NC_006273.1 + 145523 0.69 0.810028
Target:  5'- aGGACGGgGGUUUGGACgGCaaAgGUGa -3'
miRNA:   3'- aCUUGCCgCCGAACCUGgCGg-UgUAC- -5'
30192 3' -56.9 NC_006273.1 + 106136 0.69 0.810028
Target:  5'- uUGAcCaGCGGCUUGG-CCGCgGCGg- -3'
miRNA:   3'- -ACUuGcCGCCGAACCuGGCGgUGUac -5'
30192 3' -56.9 NC_006273.1 + 56268 0.69 0.813422
Target:  5'- gGGACGGUGGCUggucugcuggggcgGGuACgGCCGCGg- -3'
miRNA:   3'- aCUUGCCGCCGAa-------------CC-UGgCGGUGUac -5'
30192 3' -56.9 NC_006273.1 + 196621 0.69 0.826746
Target:  5'- cGGACGGgagcugcgcCGGCggUGGGCCGgCACGa- -3'
miRNA:   3'- aCUUGCC---------GCCGa-ACCUGGCgGUGUac -5'
30192 3' -56.9 NC_006273.1 + 1729 0.69 0.826746
Target:  5'- cGGACGGgagcugcgcCGGCggUGGGCCGgCACGa- -3'
miRNA:   3'- aCUUGCC---------GCCGa-ACCUGGCgGUGUac -5'
30192 3' -56.9 NC_006273.1 + 193087 0.69 0.826746
Target:  5'- cUGGACGGCuGGagcUGGAUCGCCAg--- -3'
miRNA:   3'- -ACUUGCCG-CCga-ACCUGGCGGUguac -5'
30192 3' -56.9 NC_006273.1 + 62039 0.69 0.834859
Target:  5'- aGAGCGGCGGC----ACCGCgGCGg- -3'
miRNA:   3'- aCUUGCCGCCGaaccUGGCGgUGUac -5'
30192 3' -56.9 NC_006273.1 + 144222 0.69 0.834859
Target:  5'- cGGcACGGCGGCUcGGA-CGaCUACGUGu -3'
miRNA:   3'- aCU-UGCCGCCGAaCCUgGC-GGUGUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.