miRNA display CGI


Results 21 - 40 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30192 3' -56.9 NC_006273.1 + 189060 0.66 0.922533
Target:  5'- cGGAcCGGCGGCguaGGCgGCCGCu-- -3'
miRNA:   3'- aCUU-GCCGCCGaacCUGgCGGUGuac -5'
30192 3' -56.9 NC_006273.1 + 124107 0.66 0.922533
Target:  5'- gUGAGCGGCGGCgucGACagaGCUcgGCGUu -3'
miRNA:   3'- -ACUUGCCGCCGaacCUGg--CGG--UGUAc -5'
30192 3' -56.9 NC_006273.1 + 73870 0.66 0.922533
Target:  5'- gUGAGC-GCGGCcgacaugcGGGCgCGCCACAg- -3'
miRNA:   3'- -ACUUGcCGCCGaa------CCUG-GCGGUGUac -5'
30192 3' -56.9 NC_006273.1 + 14951 0.66 0.917073
Target:  5'- aUGAACGGaugGGCUgGGGuuGCUugAUa -3'
miRNA:   3'- -ACUUGCCg--CCGAaCCUggCGGugUAc -5'
30192 3' -56.9 NC_006273.1 + 93010 0.66 0.917073
Target:  5'- cUGAGCGGCugcggaacgcGGCccGGGCCcgauGCCACGg- -3'
miRNA:   3'- -ACUUGCCG----------CCGaaCCUGG----CGGUGUac -5'
30192 3' -56.9 NC_006273.1 + 160809 0.66 0.917073
Target:  5'- uUGGGCGGCGGaUUGGG--GCgGCAUGc -3'
miRNA:   3'- -ACUUGCCGCCgAACCUggCGgUGUAC- -5'
30192 3' -56.9 NC_006273.1 + 83691 0.66 0.917073
Target:  5'- ---cUGGCGGUggaGGAcaaCCGCCugGUGg -3'
miRNA:   3'- acuuGCCGCCGaa-CCU---GGCGGugUAC- -5'
30192 3' -56.9 NC_006273.1 + 133754 0.67 0.913689
Target:  5'- -cGACGGCGGCcaUGGagcugcacucacgcgGCCGUCACGa- -3'
miRNA:   3'- acUUGCCGCCGa-ACC---------------UGGCGGUGUac -5'
30192 3' -56.9 NC_006273.1 + 61926 0.67 0.911388
Target:  5'- -cGACGGCGGCggagacgaGGACCGguugccguucuaCCACAa- -3'
miRNA:   3'- acUUGCCGCCGaa------CCUGGC------------GGUGUac -5'
30192 3' -56.9 NC_006273.1 + 154212 0.67 0.911388
Target:  5'- gGAGCacGUGGCcuacgUGGACCGCUuCGUGc -3'
miRNA:   3'- aCUUGc-CGCCGa----ACCUGGCGGuGUAC- -5'
30192 3' -56.9 NC_006273.1 + 166665 0.67 0.911388
Target:  5'- -uGACaGCGGCaagUGGGgCGCCGCGa- -3'
miRNA:   3'- acUUGcCGCCGa--ACCUgGCGGUGUac -5'
30192 3' -56.9 NC_006273.1 + 140337 0.67 0.911388
Target:  5'- aGAGcCGGCGGCUaggccgagGGACCcccgGUCACGa- -3'
miRNA:   3'- aCUU-GCCGCCGAa-------CCUGG----CGGUGUac -5'
30192 3' -56.9 NC_006273.1 + 70680 0.67 0.911388
Target:  5'- -uGGCGGCGGUggaGGGCgCGCgGCAa- -3'
miRNA:   3'- acUUGCCGCCGaa-CCUG-GCGgUGUac -5'
30192 3' -56.9 NC_006273.1 + 82267 0.67 0.910807
Target:  5'- aGGAUcaaGGCgucgucguacuugGGCgUGGGCCGCgGCGUGg -3'
miRNA:   3'- aCUUG---CCG-------------CCGaACCUGGCGgUGUAC- -5'
30192 3' -56.9 NC_006273.1 + 30598 0.67 0.905481
Target:  5'- aGAcCGGCGGCaccGGcGCCGCCAa--- -3'
miRNA:   3'- aCUuGCCGCCGaa-CC-UGGCGGUguac -5'
30192 3' -56.9 NC_006273.1 + 87563 0.67 0.905481
Target:  5'- cGAACGugugaagccGCGGCUcGGcacgGCCGCCACc-- -3'
miRNA:   3'- aCUUGC---------CGCCGAaCC----UGGCGGUGuac -5'
30192 3' -56.9 NC_006273.1 + 119454 0.67 0.904878
Target:  5'- uUGAGCGGCGGaCUgcuGACgcgcuuugugcagCGCCACAc- -3'
miRNA:   3'- -ACUUGCCGCC-GAac-CUG-------------GCGGUGUac -5'
30192 3' -56.9 NC_006273.1 + 90264 0.67 0.899353
Target:  5'- -cGGCGGCGGCgaaucgcccGGGCUGCCccGCAg- -3'
miRNA:   3'- acUUGCCGCCGaa-------CCUGGCGG--UGUac -5'
30192 3' -56.9 NC_006273.1 + 96266 0.67 0.899353
Target:  5'- -cGACGGCGGCUUcaGuACCGCCGuCGa- -3'
miRNA:   3'- acUUGCCGCCGAA--CcUGGCGGU-GUac -5'
30192 3' -56.9 NC_006273.1 + 1722 0.67 0.899353
Target:  5'- -cGGCGGUGGCgacUGGGCCGacagCGCAa- -3'
miRNA:   3'- acUUGCCGCCGa--ACCUGGCg---GUGUac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.