miRNA display CGI


Results 41 - 60 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30192 3' -56.9 NC_006273.1 + 90264 0.67 0.899353
Target:  5'- -cGGCGGCGGCgaaucgcccGGGCUGCCccGCAg- -3'
miRNA:   3'- acUUGCCGCCGaa-------CCUGGCGG--UGUac -5'
30192 3' -56.9 NC_006273.1 + 68421 0.67 0.899353
Target:  5'- aUGAGCGGCGGacUGGACgUGaCCACc-- -3'
miRNA:   3'- -ACUUGCCGCCgaACCUG-GC-GGUGuac -5'
30192 3' -56.9 NC_006273.1 + 1722 0.67 0.899353
Target:  5'- -cGGCGGUGGCgacUGGGCCGacagCGCAa- -3'
miRNA:   3'- acUUGCCGCCGa--ACCUGGCg---GUGUac -5'
30192 3' -56.9 NC_006273.1 + 93579 0.67 0.886446
Target:  5'- uUGAGCGGCGGCggccugcgcGGccuguACCGCgGCuUGa -3'
miRNA:   3'- -ACUUGCCGCCGaa-------CC-----UGGCGgUGuAC- -5'
30192 3' -56.9 NC_006273.1 + 98719 0.68 0.879673
Target:  5'- uUGGAaGGCGGCUccaaUGGACC--CGCGUGa -3'
miRNA:   3'- -ACUUgCCGCCGA----ACCUGGcgGUGUAC- -5'
30192 3' -56.9 NC_006273.1 + 21212 0.68 0.879673
Target:  5'- gGggUGGcCGGCU---GCCGCCGCuGUGg -3'
miRNA:   3'- aCuuGCC-GCCGAaccUGGCGGUG-UAC- -5'
30192 3' -56.9 NC_006273.1 + 147987 0.68 0.879673
Target:  5'- -cGGCGGCGGCgguggUGGAggagguugCGCCGCAa- -3'
miRNA:   3'- acUUGCCGCCGa----ACCUg-------GCGGUGUac -5'
30192 3' -56.9 NC_006273.1 + 81597 0.68 0.879673
Target:  5'- -aGGCGGCGGCcgcGGCCGCgGCGg- -3'
miRNA:   3'- acUUGCCGCCGaacCUGGCGgUGUac -5'
30192 3' -56.9 NC_006273.1 + 140142 0.68 0.872693
Target:  5'- aGAACGGCGGUgggucucGGGCCaaacGCCGuCGUa -3'
miRNA:   3'- aCUUGCCGCCGaa-----CCUGG----CGGU-GUAc -5'
30192 3' -56.9 NC_006273.1 + 232379 0.68 0.872693
Target:  5'- cGGGCGGCaGCccuuggGGACCGuUgGCAUGg -3'
miRNA:   3'- aCUUGCCGcCGaa----CCUGGC-GgUGUAC- -5'
30192 3' -56.9 NC_006273.1 + 157880 0.68 0.872693
Target:  5'- aGAugGGCGGCUgguuggUGGAgaGCUugAg- -3'
miRNA:   3'- aCUugCCGCCGA------ACCUggCGGugUac -5'
30192 3' -56.9 NC_006273.1 + 152863 0.68 0.872693
Target:  5'- -cAGCGcGCGGUagGGAaacaaCGCCGCGUGu -3'
miRNA:   3'- acUUGC-CGCCGaaCCUg----GCGGUGUAC- -5'
30192 3' -56.9 NC_006273.1 + 167321 0.68 0.865511
Target:  5'- -cAGCGGCGGCagcGGCgGCCACGg- -3'
miRNA:   3'- acUUGCCGCCGaacCUGgCGGUGUac -5'
30192 3' -56.9 NC_006273.1 + 7893 0.68 0.85813
Target:  5'- cUGGuACGGUGGCggcGGACUGUCAgGUa -3'
miRNA:   3'- -ACU-UGCCGCCGaa-CCUGGCGGUgUAc -5'
30192 3' -56.9 NC_006273.1 + 162779 0.68 0.85813
Target:  5'- gUGGugGCGGCGGCa---GCgGCCGCAUGu -3'
miRNA:   3'- -ACU--UGCCGCCGaaccUGgCGGUGUAC- -5'
30192 3' -56.9 NC_006273.1 + 44454 0.68 0.85813
Target:  5'- --cGCGGCcaguuGC-UGGACCGCCGCGc- -3'
miRNA:   3'- acuUGCCGc----CGaACCUGGCGGUGUac -5'
30192 3' -56.9 NC_006273.1 + 131860 0.68 0.850557
Target:  5'- aGAGaaGCGGCUgcaguUGGACCGCCu---- -3'
miRNA:   3'- aCUUgcCGCCGA-----ACCUGGCGGuguac -5'
30192 3' -56.9 NC_006273.1 + 148832 0.68 0.850557
Target:  5'- cGGcCGGCGGCgaucgucgcUGGcuguugccgccGCUGCCGCGUGa -3'
miRNA:   3'- aCUuGCCGCCGa--------ACC-----------UGGCGGUGUAC- -5'
30192 3' -56.9 NC_006273.1 + 113134 0.68 0.850557
Target:  5'- -aGGCGGCGGCcgcagaGGGCgCGCCGCu-- -3'
miRNA:   3'- acUUGCCGCCGaa----CCUG-GCGGUGuac -5'
30192 3' -56.9 NC_006273.1 + 2463 0.68 0.842798
Target:  5'- gGAGCGGCcGCgcugGGACgCGCUGCAc- -3'
miRNA:   3'- aCUUGCCGcCGaa--CCUG-GCGGUGUac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.