miRNA display CGI


Results 1 - 20 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30192 3' -56.9 NC_006273.1 + 1346 0.66 0.941682
Target:  5'- aUGAACGGCgugGGCgcgacGGACCugcgucagcugucGCCGCGg- -3'
miRNA:   3'- -ACUUGCCG---CCGaa---CCUGG-------------CGGUGUac -5'
30192 3' -56.9 NC_006273.1 + 1722 0.67 0.899353
Target:  5'- -cGGCGGUGGCgacUGGGCCGacagCGCAa- -3'
miRNA:   3'- acUUGCCGCCGa--ACCUGGCg---GUGUac -5'
30192 3' -56.9 NC_006273.1 + 1729 0.69 0.826746
Target:  5'- cGGACGGgagcugcgcCGGCggUGGGCCGgCACGa- -3'
miRNA:   3'- aCUUGCC---------GCCGa-ACCUGGCgGUGUac -5'
30192 3' -56.9 NC_006273.1 + 2233 0.69 0.792702
Target:  5'- gGucCGGCGGCgucggGGACCguGCCGCGc- -3'
miRNA:   3'- aCuuGCCGCCGaa---CCUGG--CGGUGUac -5'
30192 3' -56.9 NC_006273.1 + 2424 0.73 0.59048
Target:  5'- cGcGCGGCGGCUgcugcccgagcUGGACCGCgaGCAg- -3'
miRNA:   3'- aCuUGCCGCCGA-----------ACCUGGCGg-UGUac -5'
30192 3' -56.9 NC_006273.1 + 2463 0.68 0.842798
Target:  5'- gGAGCGGCcGCgcugGGACgCGCUGCAc- -3'
miRNA:   3'- aCUUGCCGcCGaa--CCUG-GCGGUGUac -5'
30192 3' -56.9 NC_006273.1 + 6442 0.7 0.774832
Target:  5'- cGAACccgGGCcuGCcacUGGACCGCCACGUa -3'
miRNA:   3'- aCUUG---CCGc-CGa--ACCUGGCGGUGUAc -5'
30192 3' -56.9 NC_006273.1 + 7694 0.77 0.381147
Target:  5'- aUGGGCGGCGGCggcagUGG-CCGCgGCAg- -3'
miRNA:   3'- -ACUUGCCGCCGa----ACCuGGCGgUGUac -5'
30192 3' -56.9 NC_006273.1 + 7893 0.68 0.85813
Target:  5'- cUGGuACGGUGGCggcGGACUGUCAgGUa -3'
miRNA:   3'- -ACU-UGCCGCCGaa-CCUGGCGGUgUAc -5'
30192 3' -56.9 NC_006273.1 + 13590 0.67 0.899353
Target:  5'- ----gGGCGGCccGGGCCGCCGu--- -3'
miRNA:   3'- acuugCCGCCGaaCCUGGCGGUguac -5'
30192 3' -56.9 NC_006273.1 + 14091 0.67 0.899353
Target:  5'- gUGAACcgcucaGUGGCUcGGACCGCCGg--- -3'
miRNA:   3'- -ACUUGc-----CGCCGAaCCUGGCGGUguac -5'
30192 3' -56.9 NC_006273.1 + 14951 0.66 0.917073
Target:  5'- aUGAACGGaugGGCUgGGGuuGCUugAUa -3'
miRNA:   3'- -ACUUGCCg--CCGAaCCUggCGGugUAc -5'
30192 3' -56.9 NC_006273.1 + 21212 0.68 0.879673
Target:  5'- gGggUGGcCGGCU---GCCGCCGCuGUGg -3'
miRNA:   3'- aCuuGCC-GCCGAaccUGGCGGUG-UAC- -5'
30192 3' -56.9 NC_006273.1 + 22100 0.66 0.942128
Target:  5'- gGAAaacgaGGCGGCggaGGAaaCUGCCGCGg- -3'
miRNA:   3'- aCUUg----CCGCCGaa-CCU--GGCGGUGUac -5'
30192 3' -56.9 NC_006273.1 + 26647 0.69 0.809175
Target:  5'- cUGcAACGGCguGGCUUGGgaacACCGCCucagcucugugugGCGUGa -3'
miRNA:   3'- -AC-UUGCCG--CCGAACC----UGGCGG-------------UGUAC- -5'
30192 3' -56.9 NC_006273.1 + 30598 0.67 0.905481
Target:  5'- aGAcCGGCGGCaccGGcGCCGCCAa--- -3'
miRNA:   3'- aCUuGCCGCCGaa-CC-UGGCGGUguac -5'
30192 3' -56.9 NC_006273.1 + 38597 0.78 0.349997
Target:  5'- aGAGCGccuGCGGCUgu-GCCGCCACAUGg -3'
miRNA:   3'- aCUUGC---CGCCGAaccUGGCGGUGUAC- -5'
30192 3' -56.9 NC_006273.1 + 39741 0.69 0.834859
Target:  5'- -aGACGGUGGagUUGGACuugCGCUACGUGc -3'
miRNA:   3'- acUUGCCGCCg-AACCUG---GCGGUGUAC- -5'
30192 3' -56.9 NC_006273.1 + 43911 0.66 0.937565
Target:  5'- aGGGCGGCGGCgccGACUuCCACc-- -3'
miRNA:   3'- aCUUGCCGCCGaacCUGGcGGUGuac -5'
30192 3' -56.9 NC_006273.1 + 44454 0.68 0.85813
Target:  5'- --cGCGGCcaguuGC-UGGACCGCCGCGc- -3'
miRNA:   3'- acuUGCCGc----CGaACCUGGCGGUGUac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.