miRNA display CGI


Results 21 - 40 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30192 3' -56.9 NC_006273.1 + 45891 0.72 0.649961
Target:  5'- aGcGCGGCGGCc-GGGCCGCCGa--- -3'
miRNA:   3'- aCuUGCCGCCGaaCCUGGCGGUguac -5'
30192 3' -56.9 NC_006273.1 + 55459 0.71 0.718607
Target:  5'- cGGGCGGUGGCc--GGCaCGCCGCAUu -3'
miRNA:   3'- aCUUGCCGCCGaacCUG-GCGGUGUAc -5'
30192 3' -56.9 NC_006273.1 + 56268 0.69 0.813422
Target:  5'- gGGACGGUGGCUggucugcuggggcgGGuACgGCCGCGg- -3'
miRNA:   3'- aCUUGCCGCCGAa-------------CC-UGgCGGUGUac -5'
30192 3' -56.9 NC_006273.1 + 61926 0.67 0.911388
Target:  5'- -cGACGGCGGCggagacgaGGACCGguugccguucuaCCACAa- -3'
miRNA:   3'- acUUGCCGCCGaa------CCUGGC------------GGUGUac -5'
30192 3' -56.9 NC_006273.1 + 62039 0.69 0.834859
Target:  5'- aGAGCGGCGGC----ACCGCgGCGg- -3'
miRNA:   3'- aCUUGCCGCCGaaccUGGCGgUGUac -5'
30192 3' -56.9 NC_006273.1 + 67721 0.78 0.342497
Target:  5'- cGAACGGCGGCcgaccccgccgUUGcGGCCGCCGCu-- -3'
miRNA:   3'- aCUUGCCGCCG-----------AAC-CUGGCGGUGuac -5'
30192 3' -56.9 NC_006273.1 + 68021 0.7 0.783831
Target:  5'- aUGggUGGCGGa--GGACUGCCGgCAg- -3'
miRNA:   3'- -ACuuGCCGCCgaaCCUGGCGGU-GUac -5'
30192 3' -56.9 NC_006273.1 + 68421 0.67 0.899353
Target:  5'- aUGAGCGGCGGacUGGACgUGaCCACc-- -3'
miRNA:   3'- -ACUUGCCGCCgaACCUG-GC-GGUGuac -5'
30192 3' -56.9 NC_006273.1 + 70680 0.67 0.911388
Target:  5'- -uGGCGGCGGUggaGGGCgCGCgGCAa- -3'
miRNA:   3'- acUUGCCGCCGaa-CCUG-GCGgUGUac -5'
30192 3' -56.9 NC_006273.1 + 72273 0.66 0.942572
Target:  5'- aGAGCGGCaGGUcgaugacgcugccgaUGaGGCCGCCGCGc- -3'
miRNA:   3'- aCUUGCCG-CCGa--------------AC-CUGGCGGUGUac -5'
30192 3' -56.9 NC_006273.1 + 73870 0.66 0.922533
Target:  5'- gUGAGC-GCGGCcgacaugcGGGCgCGCCACAg- -3'
miRNA:   3'- -ACUUGcCGCCGaa------CCUG-GCGGUGUac -5'
30192 3' -56.9 NC_006273.1 + 80029 0.7 0.747147
Target:  5'- cGAGCGGCaacguGGCgaaGcGACCGCC-CGUGa -3'
miRNA:   3'- aCUUGCCG-----CCGaa-C-CUGGCGGuGUAC- -5'
30192 3' -56.9 NC_006273.1 + 80385 0.71 0.699219
Target:  5'- gGAGCGGCGGCcgUGG-CgGCgGCAg- -3'
miRNA:   3'- aCUUGCCGCCGa-ACCuGgCGgUGUac -5'
30192 3' -56.9 NC_006273.1 + 81597 0.68 0.879673
Target:  5'- -aGGCGGCGGCcgcGGCCGCgGCGg- -3'
miRNA:   3'- acUUGCCGCCGaacCUGGCGgUGUac -5'
30192 3' -56.9 NC_006273.1 + 82267 0.67 0.910807
Target:  5'- aGGAUcaaGGCgucgucguacuugGGCgUGGGCCGCgGCGUGg -3'
miRNA:   3'- aCUUG---CCG-------------CCGaACCUGGCGgUGUAC- -5'
30192 3' -56.9 NC_006273.1 + 83691 0.66 0.917073
Target:  5'- ---cUGGCGGUggaGGAcaaCCGCCugGUGg -3'
miRNA:   3'- acuuGCCGCCGaa-CCU---GGCGGugUAC- -5'
30192 3' -56.9 NC_006273.1 + 84099 0.69 0.801437
Target:  5'- cGAGCGGCGGCccaGGAaCGCUugAa- -3'
miRNA:   3'- aCUUGCCGCCGaa-CCUgGCGGugUac -5'
30192 3' -56.9 NC_006273.1 + 84833 0.66 0.93278
Target:  5'- gUGGACGGUuggcccgugGGCcUGGGCCuGCUagACGUGc -3'
miRNA:   3'- -ACUUGCCG---------CCGaACCUGG-CGG--UGUAC- -5'
30192 3' -56.9 NC_006273.1 + 86541 0.72 0.630109
Target:  5'- -uGACGGaCGGU--GGACCGCUAUAUGg -3'
miRNA:   3'- acUUGCC-GCCGaaCCUGGCGGUGUAC- -5'
30192 3' -56.9 NC_006273.1 + 87563 0.67 0.905481
Target:  5'- cGAACGugugaagccGCGGCUcGGcacgGCCGCCACc-- -3'
miRNA:   3'- aCUUGC---------CGCCGAaCC----UGGCGGUGuac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.