miRNA display CGI


Results 1 - 20 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30192 3' -56.9 NC_006273.1 + 232379 0.68 0.872693
Target:  5'- cGGGCGGCaGCccuuggGGACCGuUgGCAUGg -3'
miRNA:   3'- aCUUGCCGcCGaa----CCUGGC-GgUGUAC- -5'
30192 3' -56.9 NC_006273.1 + 230529 0.69 0.792702
Target:  5'- aGAACGGCGGgaCUUa-GCCGCC-CGUGg -3'
miRNA:   3'- aCUUGCCGCC--GAAccUGGCGGuGUAC- -5'
30192 3' -56.9 NC_006273.1 + 229541 0.68 0.842798
Target:  5'- aUGAcCGGaCGuGCUUGGACUGgUACAUa -3'
miRNA:   3'- -ACUuGCC-GC-CGAACCUGGCgGUGUAc -5'
30192 3' -56.9 NC_006273.1 + 227057 0.77 0.378748
Target:  5'- cGGcACGGCGGCUcuuggauucggcauUGGugCGCCGCGUc -3'
miRNA:   3'- aCU-UGCCGCCGA--------------ACCugGCGGUGUAc -5'
30192 3' -56.9 NC_006273.1 + 221800 0.73 0.570809
Target:  5'- aGcACGGCGGCccGGGCCGCCcgGCGg- -3'
miRNA:   3'- aCuUGCCGCCGaaCCUGGCGG--UGUac -5'
30192 3' -56.9 NC_006273.1 + 217943 0.72 0.630109
Target:  5'- ---cCGGCGGCguagUGGACCGCgGUAUGu -3'
miRNA:   3'- acuuGCCGCCGa---ACCUGGCGgUGUAC- -5'
30192 3' -56.9 NC_006273.1 + 207469 0.66 0.927769
Target:  5'- aUGggUGGUGGCUacgagccACCGCCACc-- -3'
miRNA:   3'- -ACuuGCCGCCGAacc----UGGCGGUGuac -5'
30192 3' -56.9 NC_006273.1 + 203986 0.66 0.927769
Target:  5'- gUGAGCcGCGGCgauucGGGCgUGCCGCGa- -3'
miRNA:   3'- -ACUUGcCGCCGaa---CCUG-GCGGUGUac -5'
30192 3' -56.9 NC_006273.1 + 197356 0.68 0.842798
Target:  5'- gGAGCGGCcGCgcugGGACgCGCUGCAc- -3'
miRNA:   3'- aCUUGCCGcCGaa--CCUG-GCGGUGUac -5'
30192 3' -56.9 NC_006273.1 + 197317 0.73 0.59048
Target:  5'- cGcGCGGCGGCUgcugcccgagcUGGACCGCgaGCAg- -3'
miRNA:   3'- aCuUGCCGCCGA-----------ACCUGGCGg-UGUac -5'
30192 3' -56.9 NC_006273.1 + 197126 0.69 0.792702
Target:  5'- gGucCGGCGGCgucggGGACCguGCCGCGc- -3'
miRNA:   3'- aCuuGCCGCCGaa---CCUGG--CGGUGUac -5'
30192 3' -56.9 NC_006273.1 + 196994 0.7 0.783831
Target:  5'- cGcAGCGGCGGCgacGGACgGCgGCGg- -3'
miRNA:   3'- aC-UUGCCGCCGaa-CCUGgCGgUGUac -5'
30192 3' -56.9 NC_006273.1 + 196621 0.69 0.826746
Target:  5'- cGGACGGgagcugcgcCGGCggUGGGCCGgCACGa- -3'
miRNA:   3'- aCUUGCC---------GCCGa-ACCUGGCgGUGUac -5'
30192 3' -56.9 NC_006273.1 + 196239 0.66 0.941682
Target:  5'- aUGAACGGCgugGGCgcgacGGACCugcgucagcugucGCCGCGg- -3'
miRNA:   3'- -ACUUGCCG---CCGaa---CCUGG-------------CGGUGUac -5'
30192 3' -56.9 NC_006273.1 + 193087 0.69 0.826746
Target:  5'- cUGGACGGCuGGagcUGGAUCGCCAg--- -3'
miRNA:   3'- -ACUUGCCG-CCga-ACCUGGCGGUguac -5'
30192 3' -56.9 NC_006273.1 + 189501 0.66 0.927769
Target:  5'- ----gGGCGGCcc-GGCCGCCGCGc- -3'
miRNA:   3'- acuugCCGCCGaacCUGGCGGUGUac -5'
30192 3' -56.9 NC_006273.1 + 189060 0.66 0.922533
Target:  5'- cGGAcCGGCGGCguaGGCgGCCGCu-- -3'
miRNA:   3'- aCUU-GCCGCCGaacCUGgCGGUGuac -5'
30192 3' -56.9 NC_006273.1 + 187899 1.08 0.004371
Target:  5'- uUGAACGGCGGCUUGGACCGCCACAUGu -3'
miRNA:   3'- -ACUUGCCGCCGAACCUGGCGGUGUAC- -5'
30192 3' -56.9 NC_006273.1 + 179035 0.69 0.834859
Target:  5'- -cGACGGCGGUUucagcUGGcaACgUGCCACGUGa -3'
miRNA:   3'- acUUGCCGCCGA-----ACC--UG-GCGGUGUAC- -5'
30192 3' -56.9 NC_006273.1 + 178844 0.72 0.679618
Target:  5'- gGAgGCGGCGGUUUGGAUCGCaACu-- -3'
miRNA:   3'- aCU-UGCCGCCGAACCUGGCGgUGuac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.