miRNA display CGI


Results 1 - 20 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30192 3' -56.9 NC_006273.1 + 131860 0.68 0.850557
Target:  5'- aGAGaaGCGGCUgcaguUGGACCGCCu---- -3'
miRNA:   3'- aCUUgcCGCCGA-----ACCUGGCGGuguac -5'
30192 3' -56.9 NC_006273.1 + 197126 0.69 0.792702
Target:  5'- gGucCGGCGGCgucggGGACCguGCCGCGc- -3'
miRNA:   3'- aCuuGCCGCCGaa---CCUGG--CGGUGUac -5'
30192 3' -56.9 NC_006273.1 + 99515 0.69 0.801437
Target:  5'- gUGGcgGCGGCGGCUgcugcuguUGGGuuGCCGuCGUa -3'
miRNA:   3'- -ACU--UGCCGCCGA--------ACCUggCGGU-GUAc -5'
30192 3' -56.9 NC_006273.1 + 56268 0.69 0.813422
Target:  5'- gGGACGGUGGCUggucugcuggggcgGGuACgGCCGCGg- -3'
miRNA:   3'- aCUUGCCGCCGAa-------------CC-UGgCGGUGUac -5'
30192 3' -56.9 NC_006273.1 + 196621 0.69 0.826746
Target:  5'- cGGACGGgagcugcgcCGGCggUGGGCCGgCACGa- -3'
miRNA:   3'- aCUUGCC---------GCCGa-ACCUGGCgGUGUac -5'
30192 3' -56.9 NC_006273.1 + 62039 0.69 0.834859
Target:  5'- aGAGCGGCGGC----ACCGCgGCGg- -3'
miRNA:   3'- aCUUGCCGCCGaaccUGGCGgUGUac -5'
30192 3' -56.9 NC_006273.1 + 144222 0.69 0.834859
Target:  5'- cGGcACGGCGGCUcGGA-CGaCUACGUGu -3'
miRNA:   3'- aCU-UGCCGCCGAaCCUgGC-GGUGUAC- -5'
30192 3' -56.9 NC_006273.1 + 39741 0.69 0.834859
Target:  5'- -aGACGGUGGagUUGGACuugCGCUACGUGc -3'
miRNA:   3'- acUUGCCGCCg-AACCUG---GCGGUGUAC- -5'
30192 3' -56.9 NC_006273.1 + 197356 0.68 0.842798
Target:  5'- gGAGCGGCcGCgcugGGACgCGCUGCAc- -3'
miRNA:   3'- aCUUGCCGcCGaa--CCUG-GCGGUGUac -5'
30192 3' -56.9 NC_006273.1 + 140720 0.7 0.756481
Target:  5'- gUGGugGCGGCGGCg-GGGCCGgCGCuUGu -3'
miRNA:   3'- -ACU--UGCCGCCGaaCCUGGCgGUGuAC- -5'
30192 3' -56.9 NC_006273.1 + 167653 0.7 0.747147
Target:  5'- gUGAGCGGCGGCgcaacggcggGGucgGCCGCCGu--- -3'
miRNA:   3'- -ACUUGCCGCCGaa--------CC---UGGCGGUguac -5'
30192 3' -56.9 NC_006273.1 + 177526 0.71 0.73677
Target:  5'- cGAAcCGGCGGCguugaacgUGGuccuuuuguugguGCCGCCGCGa- -3'
miRNA:   3'- aCUU-GCCGCCGa-------ACC-------------UGGCGGUGUac -5'
30192 3' -56.9 NC_006273.1 + 164547 0.78 0.349997
Target:  5'- aGGGCGGCGGCggucGGcCCGCCAgCGUGc -3'
miRNA:   3'- aCUUGCCGCCGaa--CCuGGCGGU-GUAC- -5'
30192 3' -56.9 NC_006273.1 + 38597 0.78 0.349997
Target:  5'- aGAGCGccuGCGGCUgu-GCCGCCACAUGg -3'
miRNA:   3'- aCUUGC---CGCCGAaccUGGCGGUGUAC- -5'
30192 3' -56.9 NC_006273.1 + 7694 0.77 0.381147
Target:  5'- aUGGGCGGCGGCggcagUGG-CCGCgGCAg- -3'
miRNA:   3'- -ACUUGCCGCCGa----ACCuGGCGgUGUac -5'
30192 3' -56.9 NC_006273.1 + 221800 0.73 0.570809
Target:  5'- aGcACGGCGGCccGGGCCGCCcgGCGg- -3'
miRNA:   3'- aCuUGCCGCCGaaCCUGGCGG--UGUac -5'
30192 3' -56.9 NC_006273.1 + 197317 0.73 0.59048
Target:  5'- cGcGCGGCGGCUgcugcccgagcUGGACCGCgaGCAg- -3'
miRNA:   3'- aCuUGCCGCCGA-----------ACCUGGCGg-UGUac -5'
30192 3' -56.9 NC_006273.1 + 86541 0.72 0.630109
Target:  5'- -uGACGGaCGGU--GGACCGCUAUAUGg -3'
miRNA:   3'- acUUGCC-GCCGaaCCUGGCGGUGUAC- -5'
30192 3' -56.9 NC_006273.1 + 122247 0.72 0.640038
Target:  5'- cUGAGCGGCGcGCccucUGcGGCCGCCGCc-- -3'
miRNA:   3'- -ACUUGCCGC-CGa---AC-CUGGCGGUGuac -5'
30192 3' -56.9 NC_006273.1 + 45891 0.72 0.649961
Target:  5'- aGcGCGGCGGCc-GGGCCGCCGa--- -3'
miRNA:   3'- aCuUGCCGCCGaaCCUGGCGGUguac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.