miRNA display CGI


Results 1 - 20 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30192 3' -56.9 NC_006273.1 + 67721 0.78 0.342497
Target:  5'- cGAACGGCGGCcgaccccgccgUUGcGGCCGCCGCu-- -3'
miRNA:   3'- aCUUGCCGCCG-----------AAC-CUGGCGGUGuac -5'
30192 3' -56.9 NC_006273.1 + 26647 0.69 0.809175
Target:  5'- cUGcAACGGCguGGCUUGGgaacACCGCCucagcucugugugGCGUGa -3'
miRNA:   3'- -AC-UUGCCG--CCGAACC----UGGCGG-------------UGUAC- -5'
30192 3' -56.9 NC_006273.1 + 106136 0.69 0.810028
Target:  5'- uUGAcCaGCGGCUUGG-CCGCgGCGg- -3'
miRNA:   3'- -ACUuGcCGCCGAACCuGGCGgUGUac -5'
30192 3' -56.9 NC_006273.1 + 1346 0.66 0.941682
Target:  5'- aUGAACGGCgugGGCgcgacGGACCugcgucagcugucGCCGCGg- -3'
miRNA:   3'- -ACUUGCCG---CCGaa---CCUGG-------------CGGUGUac -5'
30192 3' -56.9 NC_006273.1 + 217943 0.72 0.630109
Target:  5'- ---cCGGCGGCguagUGGACCGCgGUAUGu -3'
miRNA:   3'- acuuGCCGCCGa---ACCUGGCGgUGUAC- -5'
30192 3' -56.9 NC_006273.1 + 125045 0.72 0.65987
Target:  5'- aGAGCGGuCGaugucagauGC-UGGACCGCCGCAc- -3'
miRNA:   3'- aCUUGCC-GC---------CGaACCUGGCGGUGUac -5'
30192 3' -56.9 NC_006273.1 + 80385 0.71 0.699219
Target:  5'- gGAGCGGCGGCcgUGG-CgGCgGCAg- -3'
miRNA:   3'- aCUUGCCGCCGa-ACCuGgCGgUGUac -5'
30192 3' -56.9 NC_006273.1 + 55459 0.71 0.718607
Target:  5'- cGGGCGGUGGCc--GGCaCGCCGCAUu -3'
miRNA:   3'- aCUUGCCGCCGaacCUG-GCGGUGUAc -5'
30192 3' -56.9 NC_006273.1 + 196994 0.7 0.783831
Target:  5'- cGcAGCGGCGGCgacGGACgGCgGCGg- -3'
miRNA:   3'- aC-UUGCCGCCGaa-CCUGgCGgUGUac -5'
30192 3' -56.9 NC_006273.1 + 167435 0.69 0.801437
Target:  5'- aUGGACGGCGuGUUgcaGGGCCuGCUGCGUc -3'
miRNA:   3'- -ACUUGCCGC-CGAa--CCUGG-CGGUGUAc -5'
30192 3' -56.9 NC_006273.1 + 2233 0.69 0.792702
Target:  5'- gGucCGGCGGCgucggGGACCguGCCGCGc- -3'
miRNA:   3'- aCuuGCCGCCGaa---CCUGG--CGGUGUac -5'
30192 3' -56.9 NC_006273.1 + 6442 0.7 0.774832
Target:  5'- cGAACccgGGCcuGCcacUGGACCGCCACGUa -3'
miRNA:   3'- aCUUG---CCGc-CGa--ACCUGGCGGUGUAc -5'
30192 3' -56.9 NC_006273.1 + 227057 0.77 0.378748
Target:  5'- cGGcACGGCGGCUcuuggauucggcauUGGugCGCCGCGUc -3'
miRNA:   3'- aCU-UGCCGCCGA--------------ACCugGCGGUGUAc -5'
30192 3' -56.9 NC_006273.1 + 230529 0.69 0.792702
Target:  5'- aGAACGGCGGgaCUUa-GCCGCC-CGUGg -3'
miRNA:   3'- aCUUGCCGCC--GAAccUGGCGGuGUAC- -5'
30192 3' -56.9 NC_006273.1 + 116975 0.74 0.532002
Target:  5'- gGAagcuGCGGCGGCUUGGGCagcaGCgGCGg- -3'
miRNA:   3'- aCU----UGCCGCCGAACCUGg---CGgUGUac -5'
30192 3' -56.9 NC_006273.1 + 80029 0.7 0.747147
Target:  5'- cGAGCGGCaacguGGCgaaGcGACCGCC-CGUGa -3'
miRNA:   3'- aCUUGCCG-----CCGaa-C-CUGGCGGuGUAC- -5'
30192 3' -56.9 NC_006273.1 + 84099 0.69 0.801437
Target:  5'- cGAGCGGCGGCccaGGAaCGCUugAa- -3'
miRNA:   3'- aCUUGCCGCCGaa-CCUgGCGGugUac -5'
30192 3' -56.9 NC_006273.1 + 145523 0.69 0.810028
Target:  5'- aGGACGGgGGUUUGGACgGCaaAgGUGa -3'
miRNA:   3'- aCUUGCCgCCGAACCUGgCGg-UgUAC- -5'
30192 3' -56.9 NC_006273.1 + 2424 0.73 0.59048
Target:  5'- cGcGCGGCGGCUgcugcccgagcUGGACCGCgaGCAg- -3'
miRNA:   3'- aCuUGCCGCCGA-----------ACCUGGCGg-UGUac -5'
30192 3' -56.9 NC_006273.1 + 178844 0.72 0.679618
Target:  5'- gGAgGCGGCGGUUUGGAUCGCaACu-- -3'
miRNA:   3'- aCU-UGCCGCCGAACCUGGCGgUGuac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.