miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30192 5' -54.7 NC_006273.1 + 139220 0.66 0.97495
Target:  5'- gUCCAgcUUCUGGUAGgaGGCGCGcugcuccUCGGa -3'
miRNA:   3'- -AGGU--AAGACCGUCg-UCGCGCa------AGCUg -5'
30192 5' -54.7 NC_006273.1 + 162392 0.66 0.97495
Target:  5'- ------gUGGCGGCGGCGgGagCGGCg -3'
miRNA:   3'- agguaagACCGUCGUCGCgCaaGCUG- -5'
30192 5' -54.7 NC_006273.1 + 40920 0.66 0.97495
Target:  5'- aCCG-UCUGcGCucgGGCGGaCGCGUgCGGCg -3'
miRNA:   3'- aGGUaAGAC-CG---UCGUC-GCGCAaGCUG- -5'
30192 5' -54.7 NC_006273.1 + 133721 0.66 0.97495
Target:  5'- aCgAUUCUGGCguuggccgAGUAGCGUGccgucgugccUUCGGCc -3'
miRNA:   3'- aGgUAAGACCG--------UCGUCGCGC----------AAGCUG- -5'
30192 5' -54.7 NC_006273.1 + 77747 0.66 0.97495
Target:  5'- gCCG-UCUcGGcCAGCAGCGUcaaGaUCGACg -3'
miRNA:   3'- aGGUaAGA-CC-GUCGUCGCG---CaAGCUG- -5'
30192 5' -54.7 NC_006273.1 + 113503 0.66 0.97339
Target:  5'- gCCGUagCcGGCGGCGgguugcccggggggcGCGCGggCGGCg -3'
miRNA:   3'- aGGUAa-GaCCGUCGU---------------CGCGCaaGCUG- -5'
30192 5' -54.7 NC_006273.1 + 115398 0.66 0.972312
Target:  5'- -gCAUUaUGaGCGGCGGCGCuGUaCGGCa -3'
miRNA:   3'- agGUAAgAC-CGUCGUCGCG-CAaGCUG- -5'
30192 5' -54.7 NC_006273.1 + 125975 0.66 0.972312
Target:  5'- gUCCGUgcaccgUGGCGGCGGCauuGCGcUCgGACa -3'
miRNA:   3'- -AGGUAag----ACCGUCGUCG---CGCaAG-CUG- -5'
30192 5' -54.7 NC_006273.1 + 55654 0.66 0.972312
Target:  5'- cCCAgUUCUucGcGCAGCGGCGCGUagUUGcGCa -3'
miRNA:   3'- aGGU-AAGA--C-CGUCGUCGCGCA--AGC-UG- -5'
30192 5' -54.7 NC_006273.1 + 32756 0.66 0.972312
Target:  5'- cUCCAgcaaCUG-CGGCAGCGag-UCGGCg -3'
miRNA:   3'- -AGGUaa--GACcGUCGUCGCgcaAGCUG- -5'
30192 5' -54.7 NC_006273.1 + 70798 0.66 0.972312
Target:  5'- cCCGUaCUGcGaCGGCAGCGCcagCGGCc -3'
miRNA:   3'- aGGUAaGAC-C-GUCGUCGCGcaaGCUG- -5'
30192 5' -54.7 NC_006273.1 + 74694 0.66 0.972037
Target:  5'- gUCCAgagagGGCAGCAacagaucguagacGCGCGgcagcaUCGGCu -3'
miRNA:   3'- -AGGUaaga-CCGUCGU-------------CGCGCa-----AGCUG- -5'
30192 5' -54.7 NC_006273.1 + 228919 0.66 0.970636
Target:  5'- cUgGUUCUGGCuGCaAGCGCuuuucacugcauuagGUUUGGCg -3'
miRNA:   3'- aGgUAAGACCGuCG-UCGCG---------------CAAGCUG- -5'
30192 5' -54.7 NC_006273.1 + 80394 0.66 0.969479
Target:  5'- gCCGUggCggcGGCAGCGGCGCagagCGAa -3'
miRNA:   3'- aGGUAa-Ga--CCGUCGUCGCGcaa-GCUg -5'
30192 5' -54.7 NC_006273.1 + 21532 0.66 0.969479
Target:  5'- gCCGgcgggcgCUGGCguuucgaggacGGCGGCGCGgcgcagCGGCu -3'
miRNA:   3'- aGGUaa-----GACCG-----------UCGUCGCGCaa----GCUG- -5'
30192 5' -54.7 NC_006273.1 + 140719 0.66 0.969479
Target:  5'- --aGUggUGGCGGCGGCGgGgcCGGCg -3'
miRNA:   3'- aggUAagACCGUCGUCGCgCaaGCUG- -5'
30192 5' -54.7 NC_006273.1 + 87253 0.66 0.966445
Target:  5'- aCUAgcUUGGCuacguggaaaAGacuaAGCGCGUUCGACa -3'
miRNA:   3'- aGGUaaGACCG----------UCg---UCGCGCAAGCUG- -5'
30192 5' -54.7 NC_006273.1 + 178632 0.66 0.966445
Target:  5'- cCCAUgggUCUGGCGGUcugggaggagguGGCgGCGguggCGGCa -3'
miRNA:   3'- aGGUA---AGACCGUCG------------UCG-CGCaa--GCUG- -5'
30192 5' -54.7 NC_006273.1 + 197030 0.66 0.966445
Target:  5'- cUCCGUgaagCUGacgaGCGGCAGCGgCGa-CGACg -3'
miRNA:   3'- -AGGUAa---GAC----CGUCGUCGC-GCaaGCUG- -5'
30192 5' -54.7 NC_006273.1 + 162759 0.66 0.966445
Target:  5'- gUCCGguggugCUGGCGGUGGUG-GUggCGGCg -3'
miRNA:   3'- -AGGUaa----GACCGUCGUCGCgCAa-GCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.