Results 1 - 20 of 56 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
30192 | 5' | -54.7 | NC_006273.1 | + | 21532 | 0.66 | 0.969479 |
Target: 5'- gCCGgcgggcgCUGGCguuucgaggacGGCGGCGCGgcgcagCGGCu -3' miRNA: 3'- aGGUaa-----GACCG-----------UCGUCGCGCaa----GCUG- -5' |
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30192 | 5' | -54.7 | NC_006273.1 | + | 162392 | 0.66 | 0.97495 |
Target: 5'- ------gUGGCGGCGGCGgGagCGGCg -3' miRNA: 3'- agguaagACCGUCGUCGCgCaaGCUG- -5' |
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30192 | 5' | -54.7 | NC_006273.1 | + | 163090 | 0.66 | 0.963204 |
Target: 5'- gCCGcgCUGcGCGGCGGCcucaucggcaGCGUcaUCGACc -3' miRNA: 3'- aGGUaaGAC-CGUCGUCG----------CGCA--AGCUG- -5' |
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30192 | 5' | -54.7 | NC_006273.1 | + | 70798 | 0.66 | 0.972312 |
Target: 5'- cCCGUaCUGcGaCGGCAGCGCcagCGGCc -3' miRNA: 3'- aGGUAaGAC-C-GUCGUCGCGcaaGCUG- -5' |
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30192 | 5' | -54.7 | NC_006273.1 | + | 87253 | 0.66 | 0.966445 |
Target: 5'- aCUAgcUUGGCuacguggaaaAGacuaAGCGCGUUCGACa -3' miRNA: 3'- aGGUaaGACCG----------UCg---UCGCGCAAGCUG- -5' |
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30192 | 5' | -54.7 | NC_006273.1 | + | 178632 | 0.66 | 0.966445 |
Target: 5'- cCCAUgggUCUGGCGGUcugggaggagguGGCgGCGguggCGGCa -3' miRNA: 3'- aGGUA---AGACCGUCG------------UCG-CGCaa--GCUG- -5' |
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30192 | 5' | -54.7 | NC_006273.1 | + | 197030 | 0.66 | 0.966445 |
Target: 5'- cUCCGUgaagCUGacgaGCGGCAGCGgCGa-CGACg -3' miRNA: 3'- -AGGUAa---GAC----CGUCGUCGC-GCaaGCUG- -5' |
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30192 | 5' | -54.7 | NC_006273.1 | + | 80394 | 0.66 | 0.969479 |
Target: 5'- gCCGUggCggcGGCAGCGGCGCagagCGAa -3' miRNA: 3'- aGGUAa-Ga--CCGUCGUCGCGcaa-GCUg -5' |
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30192 | 5' | -54.7 | NC_006273.1 | + | 15652 | 0.66 | 0.963204 |
Target: 5'- -gCAUUCaccuaUGGCAGCuGGgGCGUUgCGAUg -3' miRNA: 3'- agGUAAG-----ACCGUCG-UCgCGCAA-GCUG- -5' |
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30192 | 5' | -54.7 | NC_006273.1 | + | 40920 | 0.66 | 0.97495 |
Target: 5'- aCCG-UCUGcGCucgGGCGGaCGCGUgCGGCg -3' miRNA: 3'- aGGUaAGAC-CG---UCGUC-GCGCAaGCUG- -5' |
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30192 | 5' | -54.7 | NC_006273.1 | + | 139220 | 0.66 | 0.97495 |
Target: 5'- gUCCAgcUUCUGGUAGgaGGCGCGcugcuccUCGGa -3' miRNA: 3'- -AGGU--AAGACCGUCg-UCGCGCa------AGCUg -5' |
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30192 | 5' | -54.7 | NC_006273.1 | + | 133721 | 0.66 | 0.97495 |
Target: 5'- aCgAUUCUGGCguuggccgAGUAGCGUGccgucgugccUUCGGCc -3' miRNA: 3'- aGgUAAGACCG--------UCGUCGCGC----------AAGCUG- -5' |
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30192 | 5' | -54.7 | NC_006273.1 | + | 140719 | 0.66 | 0.969479 |
Target: 5'- --aGUggUGGCGGCGGCGgGgcCGGCg -3' miRNA: 3'- aggUAagACCGUCGUCGCgCaaGCUG- -5' |
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30192 | 5' | -54.7 | NC_006273.1 | + | 55654 | 0.66 | 0.972312 |
Target: 5'- cCCAgUUCUucGcGCAGCGGCGCGUagUUGcGCa -3' miRNA: 3'- aGGU-AAGA--C-CGUCGUCGCGCA--AGC-UG- -5' |
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30192 | 5' | -54.7 | NC_006273.1 | + | 74694 | 0.66 | 0.972037 |
Target: 5'- gUCCAgagagGGCAGCAacagaucguagacGCGCGgcagcaUCGGCu -3' miRNA: 3'- -AGGUaaga-CCGUCGU-------------CGCGCa-----AGCUG- -5' |
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30192 | 5' | -54.7 | NC_006273.1 | + | 32756 | 0.66 | 0.972312 |
Target: 5'- cUCCAgcaaCUG-CGGCAGCGag-UCGGCg -3' miRNA: 3'- -AGGUaa--GACcGUCGUCGCgcaAGCUG- -5' |
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30192 | 5' | -54.7 | NC_006273.1 | + | 125975 | 0.66 | 0.972312 |
Target: 5'- gUCCGUgcaccgUGGCGGCGGCauuGCGcUCgGACa -3' miRNA: 3'- -AGGUAag----ACCGUCGUCG---CGCaAG-CUG- -5' |
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30192 | 5' | -54.7 | NC_006273.1 | + | 113503 | 0.66 | 0.97339 |
Target: 5'- gCCGUagCcGGCGGCGgguugcccggggggcGCGCGggCGGCg -3' miRNA: 3'- aGGUAa-GaCCGUCGU---------------CGCGCaaGCUG- -5' |
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30192 | 5' | -54.7 | NC_006273.1 | + | 115398 | 0.66 | 0.972312 |
Target: 5'- -gCAUUaUGaGCGGCGGCGCuGUaCGGCa -3' miRNA: 3'- agGUAAgAC-CGUCGUCGCG-CAaGCUG- -5' |
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30192 | 5' | -54.7 | NC_006273.1 | + | 77747 | 0.66 | 0.97495 |
Target: 5'- gCCG-UCUcGGcCAGCAGCGUcaaGaUCGACg -3' miRNA: 3'- aGGUaAGA-CC-GUCGUCGCG---CaAGCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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