Results 21 - 40 of 56 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
30192 | 5' | -54.7 | NC_006273.1 | + | 163090 | 0.66 | 0.963204 |
Target: 5'- gCCGcgCUGcGCGGCGGCcucaucggcaGCGUcaUCGACc -3' miRNA: 3'- aGGUaaGAC-CGUCGUCG----------CGCA--AGCUG- -5' |
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30192 | 5' | -54.7 | NC_006273.1 | + | 15652 | 0.66 | 0.963204 |
Target: 5'- -gCAUUCaccuaUGGCAGCuGGgGCGUUgCGAUg -3' miRNA: 3'- agGUAAG-----ACCGUCG-UCgCGCAA-GCUG- -5' |
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30192 | 5' | -54.7 | NC_006273.1 | + | 16934 | 0.67 | 0.961158 |
Target: 5'- -aCAUg--GGCgaGGCGGCGCGUcuucacuuuaccaguUCGACa -3' miRNA: 3'- agGUAagaCCG--UCGUCGCGCA---------------AGCUG- -5' |
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30192 | 5' | -54.7 | NC_006273.1 | + | 69659 | 0.67 | 0.959751 |
Target: 5'- aCCGc-CUGGCAcCAGCGCa-UCGACa -3' miRNA: 3'- aGGUaaGACCGUcGUCGCGcaAGCUG- -5' |
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30192 | 5' | -54.7 | NC_006273.1 | + | 228330 | 0.67 | 0.956081 |
Target: 5'- aCCGgcaucgugcUUCUGGCGGCGGaCGCucUCGGa -3' miRNA: 3'- aGGU---------AAGACCGUCGUC-GCGcaAGCUg -5' |
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30192 | 5' | -54.7 | NC_006273.1 | + | 214824 | 0.67 | 0.95219 |
Target: 5'- cUCCAUgCgggaGaGCAGCAGCGCGUUa-GCc -3' miRNA: 3'- -AGGUAaGa---C-CGUCGUCGCGCAAgcUG- -5' |
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30192 | 5' | -54.7 | NC_006273.1 | + | 206104 | 0.67 | 0.948074 |
Target: 5'- cUCCAgcgUCUGGUAGUacacccGGgGUGU-CGGCg -3' miRNA: 3'- -AGGUa--AGACCGUCG------UCgCGCAaGCUG- -5' |
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30192 | 5' | -54.7 | NC_006273.1 | + | 36642 | 0.67 | 0.943731 |
Target: 5'- cCCAUgcgggaaCUGGCcuGGCGGCGgGUagcCGACg -3' miRNA: 3'- aGGUAa------GACCG--UCGUCGCgCAa--GCUG- -5' |
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30192 | 5' | -54.7 | NC_006273.1 | + | 43906 | 0.67 | 0.943731 |
Target: 5'- gUCCAag--GGCGGCGGCGC---CGACu -3' miRNA: 3'- -AGGUaagaCCGUCGUCGCGcaaGCUG- -5' |
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30192 | 5' | -54.7 | NC_006273.1 | + | 123448 | 0.67 | 0.943731 |
Target: 5'- --aGUUCUGGCAgauGCAGCGCca--GACa -3' miRNA: 3'- aggUAAGACCGU---CGUCGCGcaagCUG- -5' |
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30192 | 5' | -54.7 | NC_006273.1 | + | 193226 | 0.68 | 0.939156 |
Target: 5'- aCCg--CUGGCGGCGGCgGCGUuaaugcugccgUUGAUg -3' miRNA: 3'- aGGuaaGACCGUCGUCG-CGCA-----------AGCUG- -5' |
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30192 | 5' | -54.7 | NC_006273.1 | + | 44642 | 0.68 | 0.939156 |
Target: 5'- -aCGUUC-GGCGGCAGCuggugGCGUUCuGCc -3' miRNA: 3'- agGUAAGaCCGUCGUCG-----CGCAAGcUG- -5' |
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30192 | 5' | -54.7 | NC_006273.1 | + | 47279 | 0.68 | 0.92931 |
Target: 5'- gCCAUguaCUacGGCAGCGGCuGuCGcUUCGACa -3' miRNA: 3'- aGGUAa--GA--CCGUCGUCG-C-GC-AAGCUG- -5' |
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30192 | 5' | -54.7 | NC_006273.1 | + | 56926 | 0.68 | 0.92931 |
Target: 5'- -------cGGCAGCAGCcCGUUUGGCa -3' miRNA: 3'- agguaagaCCGUCGUCGcGCAAGCUG- -5' |
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30192 | 5' | -54.7 | NC_006273.1 | + | 129468 | 0.68 | 0.92931 |
Target: 5'- cUCCAUcgcGGCGGCGGCGUGagcgCGAg -3' miRNA: 3'- -AGGUAagaCCGUCGUCGCGCaa--GCUg -5' |
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30192 | 5' | -54.7 | NC_006273.1 | + | 60896 | 0.68 | 0.92931 |
Target: 5'- ----aUCUGGC-GCgGGCGCGUgaugCGACg -3' miRNA: 3'- agguaAGACCGuCG-UCGCGCAa---GCUG- -5' |
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30192 | 5' | -54.7 | NC_006273.1 | + | 162243 | 0.68 | 0.924035 |
Target: 5'- gUCCucgUUgggUGGCAGCGGCGgGacucgCGACg -3' miRNA: 3'- -AGGua-AG---ACCGUCGUCGCgCaa---GCUG- -5' |
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30192 | 5' | -54.7 | NC_006273.1 | + | 142051 | 0.68 | 0.924035 |
Target: 5'- gUCCAcgucgUCUcGCGGCAGCGCcgccagCGGCg -3' miRNA: 3'- -AGGUa----AGAcCGUCGUCGCGcaa---GCUG- -5' |
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30192 | 5' | -54.7 | NC_006273.1 | + | 197180 | 0.68 | 0.918527 |
Target: 5'- uUCCGccgUCUccggaugagcGGCcGCGGCGCGggcUCGGCg -3' miRNA: 3'- -AGGUa--AGA----------CCGuCGUCGCGCa--AGCUG- -5' |
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30192 | 5' | -54.7 | NC_006273.1 | + | 119375 | 0.68 | 0.912785 |
Target: 5'- cCCGgggCUGGacuuugaGGCGGcCGUGUUCGAUg -3' miRNA: 3'- aGGUaa-GACCg------UCGUC-GCGCAAGCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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