miRNA display CGI


Results 1 - 20 of 56 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30192 5' -54.7 NC_006273.1 + 15652 0.66 0.963204
Target:  5'- -gCAUUCaccuaUGGCAGCuGGgGCGUUgCGAUg -3'
miRNA:   3'- agGUAAG-----ACCGUCG-UCgCGCAA-GCUG- -5'
30192 5' -54.7 NC_006273.1 + 16934 0.67 0.961158
Target:  5'- -aCAUg--GGCgaGGCGGCGCGUcuucacuuuaccaguUCGACa -3'
miRNA:   3'- agGUAagaCCG--UCGUCGCGCA---------------AGCUG- -5'
30192 5' -54.7 NC_006273.1 + 17076 0.72 0.754974
Target:  5'- aCCA-UCUGGCAgGC-GCGCGUgguccgCGGCg -3'
miRNA:   3'- aGGUaAGACCGU-CGuCGCGCAa-----GCUG- -5'
30192 5' -54.7 NC_006273.1 + 21532 0.66 0.969479
Target:  5'- gCCGgcgggcgCUGGCguuucgaggacGGCGGCGCGgcgcagCGGCu -3'
miRNA:   3'- aGGUaa-----GACCG-----------UCGUCGCGCaa----GCUG- -5'
30192 5' -54.7 NC_006273.1 + 32756 0.66 0.972312
Target:  5'- cUCCAgcaaCUG-CGGCAGCGag-UCGGCg -3'
miRNA:   3'- -AGGUaa--GACcGUCGUCGCgcaAGCUG- -5'
30192 5' -54.7 NC_006273.1 + 36642 0.67 0.943731
Target:  5'- cCCAUgcgggaaCUGGCcuGGCGGCGgGUagcCGACg -3'
miRNA:   3'- aGGUAa------GACCG--UCGUCGCgCAa--GCUG- -5'
30192 5' -54.7 NC_006273.1 + 38067 0.72 0.764408
Target:  5'- gUCCAgcUCgGGCAGCAgccgccGCGCGgccUCGGCg -3'
miRNA:   3'- -AGGUa-AGaCCGUCGU------CGCGCa--AGCUG- -5'
30192 5' -54.7 NC_006273.1 + 40920 0.66 0.97495
Target:  5'- aCCG-UCUGcGCucgGGCGGaCGCGUgCGGCg -3'
miRNA:   3'- aGGUaAGAC-CG---UCGUC-GCGCAaGCUG- -5'
30192 5' -54.7 NC_006273.1 + 43906 0.67 0.943731
Target:  5'- gUCCAag--GGCGGCGGCGC---CGACu -3'
miRNA:   3'- -AGGUaagaCCGUCGUCGCGcaaGCUG- -5'
30192 5' -54.7 NC_006273.1 + 44642 0.68 0.939156
Target:  5'- -aCGUUC-GGCGGCAGCuggugGCGUUCuGCc -3'
miRNA:   3'- agGUAAGaCCGUCGUCG-----CGCAAGcUG- -5'
30192 5' -54.7 NC_006273.1 + 47279 0.68 0.92931
Target:  5'- gCCAUguaCUacGGCAGCGGCuGuCGcUUCGACa -3'
miRNA:   3'- aGGUAa--GA--CCGUCGUCG-C-GC-AAGCUG- -5'
30192 5' -54.7 NC_006273.1 + 55654 0.66 0.972312
Target:  5'- cCCAgUUCUucGcGCAGCGGCGCGUagUUGcGCa -3'
miRNA:   3'- aGGU-AAGA--C-CGUCGUCGCGCA--AGC-UG- -5'
30192 5' -54.7 NC_006273.1 + 56926 0.68 0.92931
Target:  5'- -------cGGCAGCAGCcCGUUUGGCa -3'
miRNA:   3'- agguaagaCCGUCGUCGcGCAAGCUG- -5'
30192 5' -54.7 NC_006273.1 + 60896 0.68 0.92931
Target:  5'- ----aUCUGGC-GCgGGCGCGUgaugCGACg -3'
miRNA:   3'- agguaAGACCGuCG-UCGCGCAa---GCUG- -5'
30192 5' -54.7 NC_006273.1 + 69659 0.67 0.959751
Target:  5'- aCCGc-CUGGCAcCAGCGCa-UCGACa -3'
miRNA:   3'- aGGUaaGACCGUcGUCGCGcaAGCUG- -5'
30192 5' -54.7 NC_006273.1 + 70798 0.66 0.972312
Target:  5'- cCCGUaCUGcGaCGGCAGCGCcagCGGCc -3'
miRNA:   3'- aGGUAaGAC-C-GUCGUCGCGcaaGCUG- -5'
30192 5' -54.7 NC_006273.1 + 74694 0.66 0.972037
Target:  5'- gUCCAgagagGGCAGCAacagaucguagacGCGCGgcagcaUCGGCu -3'
miRNA:   3'- -AGGUaaga-CCGUCGU-------------CGCGCa-----AGCUG- -5'
30192 5' -54.7 NC_006273.1 + 77747 0.66 0.97495
Target:  5'- gCCG-UCUcGGcCAGCAGCGUcaaGaUCGACg -3'
miRNA:   3'- aGGUaAGA-CC-GUCGUCGCG---CaAGCUG- -5'
30192 5' -54.7 NC_006273.1 + 80394 0.66 0.969479
Target:  5'- gCCGUggCggcGGCAGCGGCGCagagCGAa -3'
miRNA:   3'- aGGUAa-Ga--CCGUCGUCGCGcaa-GCUg -5'
30192 5' -54.7 NC_006273.1 + 81589 0.69 0.900607
Target:  5'- gUCCucgCaGGCGGCGGCcGCGgccgCGGCg -3'
miRNA:   3'- -AGGuaaGaCCGUCGUCG-CGCaa--GCUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.