miRNA display CGI


Results 21 - 40 of 56 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30192 5' -54.7 NC_006273.1 + 87253 0.66 0.966445
Target:  5'- aCUAgcUUGGCuacguggaaaAGacuaAGCGCGUUCGACa -3'
miRNA:   3'- aGGUaaGACCG----------UCg---UCGCGCAAGCUG- -5'
30192 5' -54.7 NC_006273.1 + 113503 0.66 0.97339
Target:  5'- gCCGUagCcGGCGGCGgguugcccggggggcGCGCGggCGGCg -3'
miRNA:   3'- aGGUAa-GaCCGUCGU---------------CGCGCaaGCUG- -5'
30192 5' -54.7 NC_006273.1 + 115398 0.66 0.972312
Target:  5'- -gCAUUaUGaGCGGCGGCGCuGUaCGGCa -3'
miRNA:   3'- agGUAAgAC-CGUCGUCGCG-CAaGCUG- -5'
30192 5' -54.7 NC_006273.1 + 116841 0.72 0.754024
Target:  5'- gCCGUUCaaacacgUGGCuuuguGCAGCGUGggUCGGCg -3'
miRNA:   3'- aGGUAAG-------ACCGu----CGUCGCGCa-AGCUG- -5'
30192 5' -54.7 NC_006273.1 + 119375 0.68 0.912785
Target:  5'- cCCGgggCUGGacuuugaGGCGGcCGUGUUCGAUg -3'
miRNA:   3'- aGGUaa-GACCg------UCGUC-GCGCAAGCUG- -5'
30192 5' -54.7 NC_006273.1 + 121859 0.72 0.745433
Target:  5'- -gCAUcUUGaGCGGCAGCGCGUacacauagaUCGACa -3'
miRNA:   3'- agGUAaGAC-CGUCGUCGCGCA---------AGCUG- -5'
30192 5' -54.7 NC_006273.1 + 123448 0.67 0.943731
Target:  5'- --aGUUCUGGCAgauGCAGCGCca--GACa -3'
miRNA:   3'- aggUAAGACCGU---CGUCGCGcaagCUG- -5'
30192 5' -54.7 NC_006273.1 + 125975 0.66 0.972312
Target:  5'- gUCCGUgcaccgUGGCGGCGGCauuGCGcUCgGACa -3'
miRNA:   3'- -AGGUAag----ACCGUCGUCG---CGCaAG-CUG- -5'
30192 5' -54.7 NC_006273.1 + 129468 0.68 0.92931
Target:  5'- cUCCAUcgcGGCGGCGGCGUGagcgCGAg -3'
miRNA:   3'- -AGGUAagaCCGUCGUCGCGCaa--GCUg -5'
30192 5' -54.7 NC_006273.1 + 133721 0.66 0.97495
Target:  5'- aCgAUUCUGGCguuggccgAGUAGCGUGccgucgugccUUCGGCc -3'
miRNA:   3'- aGgUAAGACCG--------UCGUCGCGC----------AAGCUG- -5'
30192 5' -54.7 NC_006273.1 + 139220 0.66 0.97495
Target:  5'- gUCCAgcUUCUGGUAGgaGGCGCGcugcuccUCGGa -3'
miRNA:   3'- -AGGU--AAGACCGUCg-UCGCGCa------AGCUg -5'
30192 5' -54.7 NC_006273.1 + 140719 0.66 0.969479
Target:  5'- --aGUggUGGCGGCGGCGgGgcCGGCg -3'
miRNA:   3'- aggUAagACCGUCGUCGCgCaaGCUG- -5'
30192 5' -54.7 NC_006273.1 + 142051 0.68 0.924035
Target:  5'- gUCCAcgucgUCUcGCGGCAGCGCcgccagCGGCg -3'
miRNA:   3'- -AGGUa----AGAcCGUCGUCGCGcaa---GCUG- -5'
30192 5' -54.7 NC_006273.1 + 144305 0.71 0.800907
Target:  5'- aCCGaUCUGGCGGCGuuguGCGCGgcggUgGGCu -3'
miRNA:   3'- aGGUaAGACCGUCGU----CGCGCa---AgCUG- -5'
30192 5' -54.7 NC_006273.1 + 149546 0.75 0.595558
Target:  5'- gCCAUUCuagcggcggcggUGGUAGUGGCGUGggCGACg -3'
miRNA:   3'- aGGUAAG------------ACCGUCGUCGCGCaaGCUG- -5'
30192 5' -54.7 NC_006273.1 + 153361 0.7 0.851018
Target:  5'- gUCCGaggCcGGCGGCAcGCGCGUgcccugcgUCGACc -3'
miRNA:   3'- -AGGUaa-GaCCGUCGU-CGCGCA--------AGCUG- -5'
30192 5' -54.7 NC_006273.1 + 153582 0.76 0.555513
Target:  5'- cCCGUaUCUGaGCGGCGGCGUGacCGGCg -3'
miRNA:   3'- aGGUA-AGAC-CGUCGUCGCGCaaGCUG- -5'
30192 5' -54.7 NC_006273.1 + 154337 0.71 0.799134
Target:  5'- cUCCGUgaaucguuacgaCUGGCGGCAGCagggucGCGcgUCGACu -3'
miRNA:   3'- -AGGUAa-----------GACCGUCGUCG------CGCa-AGCUG- -5'
30192 5' -54.7 NC_006273.1 + 162243 0.68 0.924035
Target:  5'- gUCCucgUUgggUGGCAGCGGCGgGacucgCGACg -3'
miRNA:   3'- -AGGua-AG---ACCGUCGUCGCgCaa---GCUG- -5'
30192 5' -54.7 NC_006273.1 + 162392 0.66 0.97495
Target:  5'- ------gUGGCGGCGGCGgGagCGGCg -3'
miRNA:   3'- agguaagACCGUCGUCGCgCaaGCUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.