Results 1 - 20 of 56 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30192 | 5' | -54.7 | NC_006273.1 | + | 232960 | 0.72 | 0.764408 |
Target: 5'- gUCCAgcUCgGGCAGCAgccgccGCGCGgccUCGGCg -3' miRNA: 3'- -AGGUa-AGaCCGUCGU------CGCGCa--AGCUG- -5' |
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30192 | 5' | -54.7 | NC_006273.1 | + | 228919 | 0.66 | 0.970636 |
Target: 5'- cUgGUUCUGGCuGCaAGCGCuuuucacugcauuagGUUUGGCg -3' miRNA: 3'- aGgUAAGACCGuCG-UCGCG---------------CAAGCUG- -5' |
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30192 | 5' | -54.7 | NC_006273.1 | + | 228330 | 0.67 | 0.956081 |
Target: 5'- aCCGgcaucgugcUUCUGGCGGCGGaCGCucUCGGa -3' miRNA: 3'- aGGU---------AAGACCGUCGUC-GCGcaAGCUg -5' |
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30192 | 5' | -54.7 | NC_006273.1 | + | 216367 | 0.69 | 0.894175 |
Target: 5'- cCCAgUUCUGGUugucuuGCAGCGCGcccgUgGGCa -3' miRNA: 3'- aGGU-AAGACCGu-----CGUCGCGCa---AgCUG- -5' |
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30192 | 5' | -54.7 | NC_006273.1 | + | 214824 | 0.67 | 0.95219 |
Target: 5'- cUCCAUgCgggaGaGCAGCAGCGCGUUa-GCc -3' miRNA: 3'- -AGGUAaGa---C-CGUCGUCGCGCAAgcUG- -5' |
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30192 | 5' | -54.7 | NC_006273.1 | + | 206104 | 0.67 | 0.948074 |
Target: 5'- cUCCAgcgUCUGGUAGUacacccGGgGUGU-CGGCg -3' miRNA: 3'- -AGGUa--AGACCGUCG------UCgCGCAaGCUG- -5' |
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30192 | 5' | -54.7 | NC_006273.1 | + | 200740 | 0.69 | 0.906811 |
Target: 5'- cUCCggUCUGGCuGCAGCaGUGcUUCG-Cu -3' miRNA: 3'- -AGGuaAGACCGuCGUCG-CGC-AAGCuG- -5' |
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30192 | 5' | -54.7 | NC_006273.1 | + | 197180 | 0.68 | 0.918527 |
Target: 5'- uUCCGccgUCUccggaugagcGGCcGCGGCGCGggcUCGGCg -3' miRNA: 3'- -AGGUa--AGA----------CCGuCGUCGCGCa--AGCUG- -5' |
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30192 | 5' | -54.7 | NC_006273.1 | + | 197030 | 0.66 | 0.966445 |
Target: 5'- cUCCGUgaagCUGacgaGCGGCAGCGgCGa-CGACg -3' miRNA: 3'- -AGGUAa---GAC----CGUCGUCGC-GCaaGCUG- -5' |
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30192 | 5' | -54.7 | NC_006273.1 | + | 193226 | 0.68 | 0.939156 |
Target: 5'- aCCg--CUGGCGGCGGCgGCGUuaaugcugccgUUGAUg -3' miRNA: 3'- aGGuaaGACCGUCGUCG-CGCA-----------AGCUG- -5' |
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30192 | 5' | -54.7 | NC_006273.1 | + | 189111 | 0.68 | 0.912785 |
Target: 5'- uUCCAggaUGGCGGCGGCugaugcaguaccGUGU-CGACg -3' miRNA: 3'- -AGGUaagACCGUCGUCG------------CGCAaGCUG- -5' |
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30192 | 5' | -54.7 | NC_006273.1 | + | 187936 | 1.11 | 0.003981 |
Target: 5'- aUCCAUUCUGGCAGCAGCGCGUUCGACg -3' miRNA: 3'- -AGGUAAGACCGUCGUCGCGCAAGCUG- -5' |
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30192 | 5' | -54.7 | NC_006273.1 | + | 180031 | 0.73 | 0.725092 |
Target: 5'- cUCCAUaCUGGUgaacgagAGCGGCGcCGUcuUCGGCg -3' miRNA: 3'- -AGGUAaGACCG-------UCGUCGC-GCA--AGCUG- -5' |
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30192 | 5' | -54.7 | NC_006273.1 | + | 178632 | 0.66 | 0.966445 |
Target: 5'- cCCAUgggUCUGGCGGUcugggaggagguGGCgGCGguggCGGCa -3' miRNA: 3'- aGGUA---AGACCGUCG------------UCG-CGCaa--GCUG- -5' |
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30192 | 5' | -54.7 | NC_006273.1 | + | 163090 | 0.66 | 0.963204 |
Target: 5'- gCCGcgCUGcGCGGCGGCcucaucggcaGCGUcaUCGACc -3' miRNA: 3'- aGGUaaGAC-CGUCGUCG----------CGCA--AGCUG- -5' |
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30192 | 5' | -54.7 | NC_006273.1 | + | 162759 | 0.66 | 0.966445 |
Target: 5'- gUCCGguggugCUGGCGGUGGUG-GUggCGGCg -3' miRNA: 3'- -AGGUaa----GACCGUCGUCGCgCAa-GCUG- -5' |
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30192 | 5' | -54.7 | NC_006273.1 | + | 162392 | 0.66 | 0.97495 |
Target: 5'- ------gUGGCGGCGGCGgGagCGGCg -3' miRNA: 3'- agguaagACCGUCGUCGCgCaaGCUG- -5' |
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30192 | 5' | -54.7 | NC_006273.1 | + | 162243 | 0.68 | 0.924035 |
Target: 5'- gUCCucgUUgggUGGCAGCGGCGgGacucgCGACg -3' miRNA: 3'- -AGGua-AG---ACCGUCGUCGCgCaa---GCUG- -5' |
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30192 | 5' | -54.7 | NC_006273.1 | + | 154337 | 0.71 | 0.799134 |
Target: 5'- cUCCGUgaaucguuacgaCUGGCGGCAGCagggucGCGcgUCGACu -3' miRNA: 3'- -AGGUAa-----------GACCGUCGUCG------CGCa-AGCUG- -5' |
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30192 | 5' | -54.7 | NC_006273.1 | + | 153582 | 0.76 | 0.555513 |
Target: 5'- cCCGUaUCUGaGCGGCGGCGUGacCGGCg -3' miRNA: 3'- aGGUA-AGAC-CGUCGUCGCGCaaGCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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