miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30192 5' -54.7 NC_006273.1 + 162759 0.66 0.966445
Target:  5'- gUCCGguggugCUGGCGGUGGUG-GUggCGGCg -3'
miRNA:   3'- -AGGUaa----GACCGUCGUCGCgCAa-GCUG- -5'
30192 5' -54.7 NC_006273.1 + 60896 0.68 0.92931
Target:  5'- ----aUCUGGC-GCgGGCGCGUgaugCGACg -3'
miRNA:   3'- agguaAGACCGuCG-UCGCGCAa---GCUG- -5'
30192 5' -54.7 NC_006273.1 + 193226 0.68 0.939156
Target:  5'- aCCg--CUGGCGGCGGCgGCGUuaaugcugccgUUGAUg -3'
miRNA:   3'- aGGuaaGACCGUCGUCG-CGCA-----------AGCUG- -5'
30192 5' -54.7 NC_006273.1 + 123448 0.67 0.943731
Target:  5'- --aGUUCUGGCAgauGCAGCGCca--GACa -3'
miRNA:   3'- aggUAAGACCGU---CGUCGCGcaagCUG- -5'
30192 5' -54.7 NC_006273.1 + 206104 0.67 0.948074
Target:  5'- cUCCAgcgUCUGGUAGUacacccGGgGUGU-CGGCg -3'
miRNA:   3'- -AGGUa--AGACCGUCG------UCgCGCAaGCUG- -5'
30192 5' -54.7 NC_006273.1 + 214824 0.67 0.95219
Target:  5'- cUCCAUgCgggaGaGCAGCAGCGCGUUa-GCc -3'
miRNA:   3'- -AGGUAaGa---C-CGUCGUCGCGCAAgcUG- -5'
30192 5' -54.7 NC_006273.1 + 228330 0.67 0.956081
Target:  5'- aCCGgcaucgugcUUCUGGCGGCGGaCGCucUCGGa -3'
miRNA:   3'- aGGU---------AAGACCGUCGUC-GCGcaAGCUg -5'
30192 5' -54.7 NC_006273.1 + 69659 0.67 0.959751
Target:  5'- aCCGc-CUGGCAcCAGCGCa-UCGACa -3'
miRNA:   3'- aGGUaaGACCGUcGUCGCGcaAGCUG- -5'
30192 5' -54.7 NC_006273.1 + 15652 0.66 0.963204
Target:  5'- -gCAUUCaccuaUGGCAGCuGGgGCGUUgCGAUg -3'
miRNA:   3'- agGUAAG-----ACCGUCG-UCgCGCAA-GCUG- -5'
30192 5' -54.7 NC_006273.1 + 129468 0.68 0.92931
Target:  5'- cUCCAUcgcGGCGGCGGCGUGagcgCGAg -3'
miRNA:   3'- -AGGUAagaCCGUCGUCGCGCaa--GCUg -5'
30192 5' -54.7 NC_006273.1 + 162243 0.68 0.924035
Target:  5'- gUCCucgUUgggUGGCAGCGGCGgGacucgCGACg -3'
miRNA:   3'- -AGGua-AG---ACCGUCGUCGCgCaa---GCUG- -5'
30192 5' -54.7 NC_006273.1 + 142051 0.68 0.924035
Target:  5'- gUCCAcgucgUCUcGCGGCAGCGCcgccagCGGCg -3'
miRNA:   3'- -AGGUa----AGAcCGUCGUCGCGcaa---GCUG- -5'
30192 5' -54.7 NC_006273.1 + 149546 0.75 0.595558
Target:  5'- gCCAUUCuagcggcggcggUGGUAGUGGCGUGggCGACg -3'
miRNA:   3'- aGGUAAG------------ACCGUCGUCGCGCaaGCUG- -5'
30192 5' -54.7 NC_006273.1 + 121859 0.72 0.745433
Target:  5'- -gCAUcUUGaGCGGCAGCGCGUacacauagaUCGACa -3'
miRNA:   3'- agGUAaGAC-CGUCGUCGCGCA---------AGCUG- -5'
30192 5' -54.7 NC_006273.1 + 116841 0.72 0.754024
Target:  5'- gCCGUUCaaacacgUGGCuuuguGCAGCGUGggUCGGCg -3'
miRNA:   3'- aGGUAAG-------ACCGu----CGUCGCGCa-AGCUG- -5'
30192 5' -54.7 NC_006273.1 + 232960 0.72 0.764408
Target:  5'- gUCCAgcUCgGGCAGCAgccgccGCGCGgccUCGGCg -3'
miRNA:   3'- -AGGUa-AGaCCGUCGU------CGCGCa--AGCUG- -5'
30192 5' -54.7 NC_006273.1 + 153361 0.7 0.851018
Target:  5'- gUCCGaggCcGGCGGCAcGCGCGUgcccugcgUCGACc -3'
miRNA:   3'- -AGGUaa-GaCCGUCGU-CGCGCA--------AGCUG- -5'
30192 5' -54.7 NC_006273.1 + 216367 0.69 0.894175
Target:  5'- cCCAgUUCUGGUugucuuGCAGCGCGcccgUgGGCa -3'
miRNA:   3'- aGGU-AAGACCGu-----CGUCGCGCa---AgCUG- -5'
30192 5' -54.7 NC_006273.1 + 200740 0.69 0.906811
Target:  5'- cUCCggUCUGGCuGCAGCaGUGcUUCG-Cu -3'
miRNA:   3'- -AGGuaAGACCGuCGUCG-CGC-AAGCuG- -5'
30192 5' -54.7 NC_006273.1 + 189111 0.68 0.912785
Target:  5'- uUCCAggaUGGCGGCGGCugaugcaguaccGUGU-CGACg -3'
miRNA:   3'- -AGGUaagACCGUCGUCG------------CGCAaGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.