Results 21 - 40 of 56 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30192 | 5' | -54.7 | NC_006273.1 | + | 121859 | 0.72 | 0.745433 |
Target: 5'- -gCAUcUUGaGCGGCAGCGCGUacacauagaUCGACa -3' miRNA: 3'- agGUAaGAC-CGUCGUCGCGCA---------AGCUG- -5' |
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30192 | 5' | -54.7 | NC_006273.1 | + | 116841 | 0.72 | 0.754024 |
Target: 5'- gCCGUUCaaacacgUGGCuuuguGCAGCGUGggUCGGCg -3' miRNA: 3'- aGGUAAG-------ACCGu----CGUCGCGCa-AGCUG- -5' |
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30192 | 5' | -54.7 | NC_006273.1 | + | 232960 | 0.72 | 0.764408 |
Target: 5'- gUCCAgcUCgGGCAGCAgccgccGCGCGgccUCGGCg -3' miRNA: 3'- -AGGUa-AGaCCGUCGU------CGCGCa--AGCUG- -5' |
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30192 | 5' | -54.7 | NC_006273.1 | + | 153361 | 0.7 | 0.851018 |
Target: 5'- gUCCGaggCcGGCGGCAcGCGCGUgcccugcgUCGACc -3' miRNA: 3'- -AGGUaa-GaCCGUCGU-CGCGCA--------AGCUG- -5' |
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30192 | 5' | -54.7 | NC_006273.1 | + | 216367 | 0.69 | 0.894175 |
Target: 5'- cCCAgUUCUGGUugucuuGCAGCGCGcccgUgGGCa -3' miRNA: 3'- aGGU-AAGACCGu-----CGUCGCGCa---AgCUG- -5' |
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30192 | 5' | -54.7 | NC_006273.1 | + | 200740 | 0.69 | 0.906811 |
Target: 5'- cUCCggUCUGGCuGCAGCaGUGcUUCG-Cu -3' miRNA: 3'- -AGGuaAGACCGuCGUCG-CGC-AAGCuG- -5' |
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30192 | 5' | -54.7 | NC_006273.1 | + | 189111 | 0.68 | 0.912785 |
Target: 5'- uUCCAggaUGGCGGCGGCugaugcaguaccGUGU-CGACg -3' miRNA: 3'- -AGGUaagACCGUCGUCG------------CGCAaGCUG- -5' |
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30192 | 5' | -54.7 | NC_006273.1 | + | 206104 | 0.67 | 0.948074 |
Target: 5'- cUCCAgcgUCUGGUAGUacacccGGgGUGU-CGGCg -3' miRNA: 3'- -AGGUa--AGACCGUCG------UCgCGCAaGCUG- -5' |
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30192 | 5' | -54.7 | NC_006273.1 | + | 123448 | 0.67 | 0.943731 |
Target: 5'- --aGUUCUGGCAgauGCAGCGCca--GACa -3' miRNA: 3'- aggUAAGACCGU---CGUCGCGcaagCUG- -5' |
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30192 | 5' | -54.7 | NC_006273.1 | + | 193226 | 0.68 | 0.939156 |
Target: 5'- aCCg--CUGGCGGCGGCgGCGUuaaugcugccgUUGAUg -3' miRNA: 3'- aGGuaaGACCGUCGUCG-CGCA-----------AGCUG- -5' |
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30192 | 5' | -54.7 | NC_006273.1 | + | 60896 | 0.68 | 0.92931 |
Target: 5'- ----aUCUGGC-GCgGGCGCGUgaugCGACg -3' miRNA: 3'- agguaAGACCGuCG-UCGCGCAa---GCUG- -5' |
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30192 | 5' | -54.7 | NC_006273.1 | + | 129468 | 0.68 | 0.92931 |
Target: 5'- cUCCAUcgcGGCGGCGGCGUGagcgCGAg -3' miRNA: 3'- -AGGUAagaCCGUCGUCGCGCaa--GCUg -5' |
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30192 | 5' | -54.7 | NC_006273.1 | + | 162243 | 0.68 | 0.924035 |
Target: 5'- gUCCucgUUgggUGGCAGCGGCGgGacucgCGACg -3' miRNA: 3'- -AGGua-AG---ACCGUCGUCGCgCaa---GCUG- -5' |
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30192 | 5' | -54.7 | NC_006273.1 | + | 142051 | 0.68 | 0.924035 |
Target: 5'- gUCCAcgucgUCUcGCGGCAGCGCcgccagCGGCg -3' miRNA: 3'- -AGGUa----AGAcCGUCGUCGCGcaa---GCUG- -5' |
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30192 | 5' | -54.7 | NC_006273.1 | + | 144305 | 0.71 | 0.800907 |
Target: 5'- aCCGaUCUGGCGGCGuuguGCGCGgcggUgGGCu -3' miRNA: 3'- aGGUaAGACCGUCGU----CGCGCa---AgCUG- -5' |
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30192 | 5' | -54.7 | NC_006273.1 | + | 154337 | 0.71 | 0.799134 |
Target: 5'- cUCCGUgaaucguuacgaCUGGCGGCAGCagggucGCGcgUCGACu -3' miRNA: 3'- -AGGUAa-----------GACCGUCGUCG------CGCa-AGCUG- -5' |
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30192 | 5' | -54.7 | NC_006273.1 | + | 38067 | 0.72 | 0.764408 |
Target: 5'- gUCCAgcUCgGGCAGCAgccgccGCGCGgccUCGGCg -3' miRNA: 3'- -AGGUa-AGaCCGUCGU------CGCGCa--AGCUG- -5' |
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30192 | 5' | -54.7 | NC_006273.1 | + | 17076 | 0.72 | 0.754974 |
Target: 5'- aCCA-UCUGGCAgGC-GCGCGUgguccgCGGCg -3' miRNA: 3'- aGGUaAGACCGU-CGuCGCGCAa-----GCUG- -5' |
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30192 | 5' | -54.7 | NC_006273.1 | + | 180031 | 0.73 | 0.725092 |
Target: 5'- cUCCAUaCUGGUgaacgagAGCGGCGcCGUcuUCGGCg -3' miRNA: 3'- -AGGUAaGACCG-------UCGUCGC-GCA--AGCUG- -5' |
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30192 | 5' | -54.7 | NC_006273.1 | + | 70798 | 0.66 | 0.972312 |
Target: 5'- cCCGUaCUGcGaCGGCAGCGCcagCGGCc -3' miRNA: 3'- aGGUAaGAC-C-GUCGUCGCGcaaGCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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