miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30192 5' -54.7 NC_006273.1 + 153582 0.76 0.555513
Target:  5'- cCCGUaUCUGaGCGGCGGCGUGacCGGCg -3'
miRNA:   3'- aGGUA-AGAC-CGUCGUCGCGCaaGCUG- -5'
30192 5' -54.7 NC_006273.1 + 178632 0.66 0.966445
Target:  5'- cCCAUgggUCUGGCGGUcugggaggagguGGCgGCGguggCGGCa -3'
miRNA:   3'- aGGUA---AGACCGUCG------------UCG-CGCaa--GCUG- -5'
30192 5' -54.7 NC_006273.1 + 80394 0.66 0.969479
Target:  5'- gCCGUggCggcGGCAGCGGCGCagagCGAa -3'
miRNA:   3'- aGGUAa-Ga--CCGUCGUCGCGcaa-GCUg -5'
30192 5' -54.7 NC_006273.1 + 70798 0.66 0.972312
Target:  5'- cCCGUaCUGcGaCGGCAGCGCcagCGGCc -3'
miRNA:   3'- aGGUAaGAC-C-GUCGUCGCGcaaGCUG- -5'
30192 5' -54.7 NC_006273.1 + 154337 0.71 0.799134
Target:  5'- cUCCGUgaaucguuacgaCUGGCGGCAGCagggucGCGcgUCGACu -3'
miRNA:   3'- -AGGUAa-----------GACCGUCGUCG------CGCa-AGCUG- -5'
30192 5' -54.7 NC_006273.1 + 144305 0.71 0.800907
Target:  5'- aCCGaUCUGGCGGCGuuguGCGCGgcggUgGGCu -3'
miRNA:   3'- aGGUaAGACCGUCGU----CGCGCa---AgCUG- -5'
30192 5' -54.7 NC_006273.1 + 119375 0.68 0.912785
Target:  5'- cCCGgggCUGGacuuugaGGCGGcCGUGUUCGAUg -3'
miRNA:   3'- aGGUaa-GACCg------UCGUC-GCGCAAGCUG- -5'
30192 5' -54.7 NC_006273.1 + 197180 0.68 0.918527
Target:  5'- uUCCGccgUCUccggaugagcGGCcGCGGCGCGggcUCGGCg -3'
miRNA:   3'- -AGGUa--AGA----------CCGuCGUCGCGCa--AGCUG- -5'
30192 5' -54.7 NC_006273.1 + 44642 0.68 0.939156
Target:  5'- -aCGUUC-GGCGGCAGCuggugGCGUUCuGCc -3'
miRNA:   3'- agGUAAGaCCGUCGUCG-----CGCAAGcUG- -5'
30192 5' -54.7 NC_006273.1 + 87253 0.66 0.966445
Target:  5'- aCUAgcUUGGCuacguggaaaAGacuaAGCGCGUUCGACa -3'
miRNA:   3'- aGGUaaGACCG----------UCg---UCGCGCAAGCUG- -5'
30192 5' -54.7 NC_006273.1 + 36642 0.67 0.943731
Target:  5'- cCCAUgcgggaaCUGGCcuGGCGGCGgGUagcCGACg -3'
miRNA:   3'- aGGUAa------GACCG--UCGUCGCgCAa--GCUG- -5'
30192 5' -54.7 NC_006273.1 + 56926 0.68 0.92931
Target:  5'- -------cGGCAGCAGCcCGUUUGGCa -3'
miRNA:   3'- agguaagaCCGUCGUCGcGCAAGCUG- -5'
30192 5' -54.7 NC_006273.1 + 180031 0.73 0.725092
Target:  5'- cUCCAUaCUGGUgaacgagAGCGGCGcCGUcuUCGGCg -3'
miRNA:   3'- -AGGUAaGACCG-------UCGUCGC-GCA--AGCUG- -5'
30192 5' -54.7 NC_006273.1 + 16934 0.67 0.961158
Target:  5'- -aCAUg--GGCgaGGCGGCGCGUcuucacuuuaccaguUCGACa -3'
miRNA:   3'- agGUAagaCCG--UCGUCGCGCA---------------AGCUG- -5'
30192 5' -54.7 NC_006273.1 + 17076 0.72 0.754974
Target:  5'- aCCA-UCUGGCAgGC-GCGCGUgguccgCGGCg -3'
miRNA:   3'- aGGUaAGACCGU-CGuCGCGCAa-----GCUG- -5'
30192 5' -54.7 NC_006273.1 + 47279 0.68 0.92931
Target:  5'- gCCAUguaCUacGGCAGCGGCuGuCGcUUCGACa -3'
miRNA:   3'- aGGUAa--GA--CCGUCGUCG-C-GC-AAGCUG- -5'
30192 5' -54.7 NC_006273.1 + 163090 0.66 0.963204
Target:  5'- gCCGcgCUGcGCGGCGGCcucaucggcaGCGUcaUCGACc -3'
miRNA:   3'- aGGUaaGAC-CGUCGUCG----------CGCA--AGCUG- -5'
30192 5' -54.7 NC_006273.1 + 197030 0.66 0.966445
Target:  5'- cUCCGUgaagCUGacgaGCGGCAGCGgCGa-CGACg -3'
miRNA:   3'- -AGGUAa---GAC----CGUCGUCGC-GCaaGCUG- -5'
30192 5' -54.7 NC_006273.1 + 38067 0.72 0.764408
Target:  5'- gUCCAgcUCgGGCAGCAgccgccGCGCGgccUCGGCg -3'
miRNA:   3'- -AGGUa-AGaCCGUCGU------CGCGCa--AGCUG- -5'
30192 5' -54.7 NC_006273.1 + 81589 0.69 0.900607
Target:  5'- gUCCucgCaGGCGGCGGCcGCGgccgCGGCg -3'
miRNA:   3'- -AGGuaaGaCCGUCGUCG-CGCaa--GCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.