miRNA display CGI


Results 1 - 20 of 164 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30193 3' -56.5 NC_006273.1 + 37702 0.66 0.953235
Target:  5'- -aUCAUCGUaUCGGAGCGcAUAGCUGa -3'
miRNA:   3'- aaGGUGGCAcAGCUUCGC-UGUCGGCg -5'
30193 3' -56.5 NC_006273.1 + 133284 0.66 0.953235
Target:  5'- -gCCGCCGUcUCGGgcgcaAGCGGCGGUuuucugcuacauCGCa -3'
miRNA:   3'- aaGGUGGCAcAGCU-----UCGCUGUCG------------GCG- -5'
30193 3' -56.5 NC_006273.1 + 101727 0.66 0.953235
Target:  5'- --gCGCCGUGgaaagUGAGGCucagacGGCGGUCGCc -3'
miRNA:   3'- aagGUGGCACa----GCUUCG------CUGUCGGCG- -5'
30193 3' -56.5 NC_006273.1 + 163071 0.66 0.953235
Target:  5'- gUCCGaggCGgcggCGAcGGCGGCGGCUGCg -3'
miRNA:   3'- aAGGUg--GCaca-GCU-UCGCUGUCGGCG- -5'
30193 3' -56.5 NC_006273.1 + 20363 0.66 0.952847
Target:  5'- -cCCACacugcucagacgaCG-GUCGcuGCGACGGUCGCu -3'
miRNA:   3'- aaGGUG-------------GCaCAGCuuCGCUGUCGGCG- -5'
30193 3' -56.5 NC_006273.1 + 38325 0.66 0.952064
Target:  5'- -gUCGCCGUGUCGucGCcGccaccgucgucgccGCuGCCGCu -3'
miRNA:   3'- aaGGUGGCACAGCuuCG-C--------------UGuCGGCG- -5'
30193 3' -56.5 NC_006273.1 + 174248 0.66 0.950873
Target:  5'- cUCCACUGUuaggagcaaggagcuGcCG-AGCGACcaugAGCCGCu -3'
miRNA:   3'- aAGGUGGCA---------------CaGCuUCGCUG----UCGGCG- -5'
30193 3' -56.5 NC_006273.1 + 144649 0.66 0.949255
Target:  5'- -gCCGCgUGUGcugaUCGAGGCGGCGuuGCgGCa -3'
miRNA:   3'- aaGGUG-GCAC----AGCUUCGCUGU--CGgCG- -5'
30193 3' -56.5 NC_006273.1 + 197040 0.66 0.949255
Target:  5'- --aCGCgGUGgucggggCGGAcGCGACGGCgGCg -3'
miRNA:   3'- aagGUGgCACa------GCUU-CGCUGUCGgCG- -5'
30193 3' -56.5 NC_006273.1 + 232977 0.66 0.949255
Target:  5'- -gCCGCCGcG-CGGccucGGCGGCGGgCGCc -3'
miRNA:   3'- aaGGUGGCaCaGCU----UCGCUGUCgGCG- -5'
30193 3' -56.5 NC_006273.1 + 178810 0.66 0.949255
Target:  5'- gUCCAaaG-GUgGAucgGGCGGCGGCgGCg -3'
miRNA:   3'- aAGGUggCaCAgCU---UCGCUGUCGgCG- -5'
30193 3' -56.5 NC_006273.1 + 2147 0.66 0.949255
Target:  5'- --aCGCgGUGgucggggCGGAcGCGACGGCgGCg -3'
miRNA:   3'- aagGUGgCACa------GCUU-CGCUGUCGgCG- -5'
30193 3' -56.5 NC_006273.1 + 104794 0.66 0.949255
Target:  5'- -aCCACC-UGcUGAAGCuGCuGCCGCu -3'
miRNA:   3'- aaGGUGGcACaGCUUCGcUGuCGGCG- -5'
30193 3' -56.5 NC_006273.1 + 156132 0.66 0.949255
Target:  5'- -aCCACCGUGUCuccGUGACGGUa-- -3'
miRNA:   3'- aaGGUGGCACAGcuuCGCUGUCGgcg -5'
30193 3' -56.5 NC_006273.1 + 131256 0.66 0.949255
Target:  5'- -aUCGCCGcGUCGGgucucGGCGugcGCGcGCCGCg -3'
miRNA:   3'- aaGGUGGCaCAGCU-----UCGC---UGU-CGGCG- -5'
30193 3' -56.5 NC_006273.1 + 99947 0.66 0.949255
Target:  5'- cUCgAgCGUGgagaCG-AGCGcGCAGCCGCu -3'
miRNA:   3'- aAGgUgGCACa---GCuUCGC-UGUCGGCG- -5'
30193 3' -56.5 NC_006273.1 + 73696 0.66 0.949255
Target:  5'- ---gGCCGUG---GAGCGAguGCCGCc -3'
miRNA:   3'- aaggUGGCACagcUUCGCUguCGGCG- -5'
30193 3' -56.5 NC_006273.1 + 68084 0.66 0.949255
Target:  5'- -gCCGCUGUGgcCGGAGUGcCcgucGCCGCa -3'
miRNA:   3'- aaGGUGGCACa-GCUUCGCuGu---CGGCG- -5'
30193 3' -56.5 NC_006273.1 + 122405 0.66 0.949255
Target:  5'- -aCCGCCGUcaCGGAGUccGGCGGaUCGCg -3'
miRNA:   3'- aaGGUGGCAcaGCUUCG--CUGUC-GGCG- -5'
30193 3' -56.5 NC_006273.1 + 38084 0.66 0.949255
Target:  5'- -gCCGCCGcG-CGGccucGGCGGCGGgCGCc -3'
miRNA:   3'- aaGGUGGCaCaGCU----UCGCUGUCgGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.