miRNA display CGI


Results 1 - 20 of 164 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30193 3' -56.5 NC_006273.1 + 188090 1.09 0.004067
Target:  5'- uUUCCACCGUGUCGAAGCGACAGCCGCu -3'
miRNA:   3'- -AAGGUGGCACAGCUUCGCUGUCGGCG- -5'
30193 3' -56.5 NC_006273.1 + 117189 0.83 0.190115
Target:  5'- gUCCGCCGagcGUUcGGGCGACAGCCGCa -3'
miRNA:   3'- aAGGUGGCa--CAGcUUCGCUGUCGGCG- -5'
30193 3' -56.5 NC_006273.1 + 31229 0.83 0.19337
Target:  5'- -aCCACCGUG-CGggGCGACacgguacgccggguAGCCGCg -3'
miRNA:   3'- aaGGUGGCACaGCuuCGCUG--------------UCGGCG- -5'
30193 3' -56.5 NC_006273.1 + 82035 0.78 0.369823
Target:  5'- -gCCGCCGgccucgGaCGAAGCGGCAGCgGCg -3'
miRNA:   3'- aaGGUGGCa-----CaGCUUCGCUGUCGgCG- -5'
30193 3' -56.5 NC_006273.1 + 126342 0.78 0.38578
Target:  5'- gUCCACCucgaagGUGUCGguGCGuACGGCCGUg -3'
miRNA:   3'- aAGGUGG------CACAGCuuCGC-UGUCGGCG- -5'
30193 3' -56.5 NC_006273.1 + 36908 0.76 0.453955
Target:  5'- aUCCuCCGUGUCGGuccuugugacGGCGaucaGCAGCCGUg -3'
miRNA:   3'- aAGGuGGCACAGCU----------UCGC----UGUCGGCG- -5'
30193 3' -56.5 NC_006273.1 + 33374 0.76 0.462932
Target:  5'- gUCC-CCGUGUCGcAGCGAguGCCa- -3'
miRNA:   3'- aAGGuGGCACAGCuUCGCUguCGGcg -5'
30193 3' -56.5 NC_006273.1 + 210418 0.74 0.547436
Target:  5'- -cCCACCGUGcuguaGAAGCccaaaaGCAGCCGCa -3'
miRNA:   3'- aaGGUGGCACag---CUUCGc-----UGUCGGCG- -5'
30193 3' -56.5 NC_006273.1 + 31278 0.74 0.55716
Target:  5'- -aCCagaGCCGU-UCGggGCGuGCGGCCGCg -3'
miRNA:   3'- aaGG---UGGCAcAGCuuCGC-UGUCGGCG- -5'
30193 3' -56.5 NC_006273.1 + 162452 0.74 0.561063
Target:  5'- aUCC-CCG-GUUGAugaaccggcagaaggAGCGGCGGCCGCc -3'
miRNA:   3'- aAGGuGGCaCAGCU---------------UCGCUGUCGGCG- -5'
30193 3' -56.5 NC_006273.1 + 90974 0.74 0.586603
Target:  5'- gUCCGCCGccgCGGcgccgGGCaGACAGCCGCu -3'
miRNA:   3'- aAGGUGGCacaGCU-----UCG-CUGUCGGCG- -5'
30193 3' -56.5 NC_006273.1 + 216597 0.74 0.586603
Target:  5'- aUCCGCg--GUCGAAGCGGCAGagaccaCGCa -3'
miRNA:   3'- aAGGUGgcaCAGCUUCGCUGUCg-----GCG- -5'
30193 3' -56.5 NC_006273.1 + 104604 0.73 0.595497
Target:  5'- -aCCACCG--UCGAuucugacGGUGAUAGCCGCg -3'
miRNA:   3'- aaGGUGGCacAGCU-------UCGCUGUCGGCG- -5'
30193 3' -56.5 NC_006273.1 + 86516 0.73 0.596487
Target:  5'- uUUUCACCGUcgccGUCGucacGCGGCAGCgGCg -3'
miRNA:   3'- -AAGGUGGCA----CAGCuu--CGCUGUCGgCG- -5'
30193 3' -56.5 NC_006273.1 + 164457 0.72 0.655082
Target:  5'- -gCCGCuCGaugacgaUGUCGgcGCGGCGGCUGCu -3'
miRNA:   3'- aaGGUG-GC-------ACAGCuuCGCUGUCGGCG- -5'
30193 3' -56.5 NC_006273.1 + 89355 0.72 0.656074
Target:  5'- gUCCugGgUGUGUCGGGccGCGGCAGUCGCu -3'
miRNA:   3'- aAGG--UgGCACAGCUU--CGCUGUCGGCG- -5'
30193 3' -56.5 NC_006273.1 + 212411 0.72 0.665986
Target:  5'- gUCCGCCGUGUUucucGGCGuACuGCUGCa -3'
miRNA:   3'- aAGGUGGCACAGcu--UCGC-UGuCGGCG- -5'
30193 3' -56.5 NC_006273.1 + 113106 0.72 0.675871
Target:  5'- gUUCCGCguuugGUCGccugccuauguaAGGCGGCGGCCGCa -3'
miRNA:   3'- -AAGGUGgca--CAGC------------UUCGCUGUCGGCG- -5'
30193 3' -56.5 NC_006273.1 + 197657 0.72 0.705292
Target:  5'- --aCGCUGcGUCGGuuucuacgcGGCGACAGCUGCu -3'
miRNA:   3'- aagGUGGCaCAGCU---------UCGCUGUCGGCG- -5'
30193 3' -56.5 NC_006273.1 + 105143 0.71 0.724629
Target:  5'- -gCCACCGgcgGUCGuucagggggaAAGCGGCGuCCGCg -3'
miRNA:   3'- aaGGUGGCa--CAGC----------UUCGCUGUcGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.