miRNA display CGI


Results 21 - 40 of 164 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30193 3' -56.5 NC_006273.1 + 104245 0.71 0.724629
Target:  5'- -gCCGCCGUGUUcGGGCGAgAGCacggGCg -3'
miRNA:   3'- aaGGUGGCACAGcUUCGCUgUCGg---CG- -5'
30193 3' -56.5 NC_006273.1 + 105143 0.71 0.724629
Target:  5'- -gCCACCGgcgGUCGuucagggggaAAGCGGCGuCCGCg -3'
miRNA:   3'- aaGGUGGCa--CAGC----------UUCGCUGUcGGCG- -5'
30193 3' -56.5 NC_006273.1 + 71461 0.71 0.743664
Target:  5'- --aCGCCGcGaUCGAGGCGGCGGCgauCGCa -3'
miRNA:   3'- aagGUGGCaC-AGCUUCGCUGUCG---GCG- -5'
30193 3' -56.5 NC_006273.1 + 163530 0.71 0.743664
Target:  5'- cUCCACUGUGgugguacgCGgcGUGACGGucCCGCg -3'
miRNA:   3'- aAGGUGGCACa-------GCuuCGCUGUC--GGCG- -5'
30193 3' -56.5 NC_006273.1 + 63819 0.71 0.743664
Target:  5'- cUUCCACCGg--C--AGCGGCAcGCCGCg -3'
miRNA:   3'- -AAGGUGGCacaGcuUCGCUGU-CGGCG- -5'
30193 3' -56.5 NC_006273.1 + 36364 0.71 0.743664
Target:  5'- -gCCcCUGagGUCGc-GCGACAGCCGCa -3'
miRNA:   3'- aaGGuGGCa-CAGCuuCGCUGUCGGCG- -5'
30193 3' -56.5 NC_006273.1 + 154910 0.71 0.743664
Target:  5'- -cCCGCCGUGgguuuuAAGCGGCAguacGCCGCc -3'
miRNA:   3'- aaGGUGGCACagc---UUCGCUGU----CGGCG- -5'
30193 3' -56.5 NC_006273.1 + 162228 0.71 0.743664
Target:  5'- cUCCGCCGUcugcguguccucGUUG-GGUGGCAGCgGCg -3'
miRNA:   3'- aAGGUGGCA------------CAGCuUCGCUGUCGgCG- -5'
30193 3' -56.5 NC_006273.1 + 140570 0.71 0.753048
Target:  5'- -cCUACCGUcGUCGucGGcCGACcGCCGCg -3'
miRNA:   3'- aaGGUGGCA-CAGCu-UC-GCUGuCGGCG- -5'
30193 3' -56.5 NC_006273.1 + 231707 0.71 0.753048
Target:  5'- aUCC-CCGgGUCGgcGuCGGCAuGCCGCu -3'
miRNA:   3'- aAGGuGGCaCAGCuuC-GCUGU-CGGCG- -5'
30193 3' -56.5 NC_006273.1 + 42050 0.7 0.762331
Target:  5'- -cCCGguuuaCGUGUCgGggGCGGCGGuuGCu -3'
miRNA:   3'- aaGGUg----GCACAG-CuuCGCUGUCggCG- -5'
30193 3' -56.5 NC_006273.1 + 162351 0.7 0.762331
Target:  5'- gUCUGCCGguggugGUgGAGGCGGCGG-CGCu -3'
miRNA:   3'- aAGGUGGCa-----CAgCUUCGCUGUCgGCG- -5'
30193 3' -56.5 NC_006273.1 + 160112 0.7 0.771506
Target:  5'- aUUCACC-UGguaUGAGGCGGCcGCCGCg -3'
miRNA:   3'- aAGGUGGcACa--GCUUCGCUGuCGGCG- -5'
30193 3' -56.5 NC_006273.1 + 17003 0.7 0.771506
Target:  5'- gUUUCGCUGgcucUGUCGAGGCGACcguuuCCGCg -3'
miRNA:   3'- -AAGGUGGC----ACAGCUUCGCUGuc---GGCG- -5'
30193 3' -56.5 NC_006273.1 + 102113 0.7 0.779663
Target:  5'- -gCCGcugcaaguCCGUGUCGGaaaucgcAGCGGCAGUgGCg -3'
miRNA:   3'- aaGGU--------GGCACAGCU-------UCGCUGUCGgCG- -5'
30193 3' -56.5 NC_006273.1 + 78491 0.7 0.780563
Target:  5'- -aUCACCGuUGUCGGAggaacccuGCGGC-GCCGCc -3'
miRNA:   3'- aaGGUGGC-ACAGCUU--------CGCUGuCGGCG- -5'
30193 3' -56.5 NC_006273.1 + 38872 0.7 0.780563
Target:  5'- -cCCAgCCG-GUUGcAGCGguACAGCCGCa -3'
miRNA:   3'- aaGGU-GGCaCAGCuUCGC--UGUCGGCG- -5'
30193 3' -56.5 NC_006273.1 + 66050 0.7 0.780563
Target:  5'- aUCCACUuUGUCGAAGauaGugAGCUGg -3'
miRNA:   3'- aAGGUGGcACAGCUUCg--CugUCGGCg -5'
30193 3' -56.5 NC_006273.1 + 233764 0.7 0.780563
Target:  5'- -cCCAgCCG-GUUGcAGCGguACAGCCGCa -3'
miRNA:   3'- aaGGU-GGCaCAGCuUCGC--UGUCGGCG- -5'
30193 3' -56.5 NC_006273.1 + 130257 0.7 0.789494
Target:  5'- -aCCGCCGguggcGUCGGuGGUGcaaccgucGCAGCCGCg -3'
miRNA:   3'- aaGGUGGCa----CAGCU-UCGC--------UGUCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.