miRNA display CGI


Results 21 - 40 of 164 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30193 3' -56.5 NC_006273.1 + 197040 0.66 0.949255
Target:  5'- --aCGCgGUGgucggggCGGAcGCGACGGCgGCg -3'
miRNA:   3'- aagGUGgCACa------GCUU-CGCUGUCGgCG- -5'
30193 3' -56.5 NC_006273.1 + 223306 0.66 0.948845
Target:  5'- -cCCAgggCGUuUCGGgcccgucGGUGACAGCCGCg -3'
miRNA:   3'- aaGGUg--GCAcAGCU-------UCGCUGUCGGCG- -5'
30193 3' -56.5 NC_006273.1 + 44442 0.66 0.945057
Target:  5'- --gCACCGUGcccCGAGGCGGCgacgGGCUaGCg -3'
miRNA:   3'- aagGUGGCACa--GCUUCGCUG----UCGG-CG- -5'
30193 3' -56.5 NC_006273.1 + 99618 0.66 0.945057
Target:  5'- -gCCGCCGUGagaAGGCGACGGCg-- -3'
miRNA:   3'- aaGGUGGCACagcUUCGCUGUCGgcg -5'
30193 3' -56.5 NC_006273.1 + 8343 0.66 0.945057
Target:  5'- -gCCGCCGUGcCGccgguuGGUGGCuGGCgGCa -3'
miRNA:   3'- aaGGUGGCACaGCu-----UCGCUG-UCGgCG- -5'
30193 3' -56.5 NC_006273.1 + 105407 0.66 0.945057
Target:  5'- -gCCGCCG-GUCGAgcccgugcAGCaGCAGCCcCa -3'
miRNA:   3'- aaGGUGGCaCAGCU--------UCGcUGUCGGcG- -5'
30193 3' -56.5 NC_006273.1 + 110809 0.66 0.945057
Target:  5'- gUCCAgCCGUGU-GGAGUGguuuGCGGUgGCa -3'
miRNA:   3'- aAGGU-GGCACAgCUUCGC----UGUCGgCG- -5'
30193 3' -56.5 NC_006273.1 + 50019 0.66 0.945057
Target:  5'- gUCC-CCGgcUCGGauGGCGauGCAGCCGUa -3'
miRNA:   3'- aAGGuGGCacAGCU--UCGC--UGUCGGCG- -5'
30193 3' -56.5 NC_006273.1 + 62348 0.66 0.945057
Target:  5'- -aCUACCGU-UCGGuuaacGGCGAUuuGGCCGUg -3'
miRNA:   3'- aaGGUGGCAcAGCU-----UCGCUG--UCGGCG- -5'
30193 3' -56.5 NC_006273.1 + 140957 0.66 0.940637
Target:  5'- aUCuCGCgCGUGaCGAGGCG-CGGaCCGUg -3'
miRNA:   3'- aAG-GUG-GCACaGCUUCGCuGUC-GGCG- -5'
30193 3' -56.5 NC_006273.1 + 78010 0.66 0.940637
Target:  5'- cUCCACCcgccGUCGcAGGCGACgcAGCCcCa -3'
miRNA:   3'- aAGGUGGca--CAGC-UUCGCUG--UCGGcG- -5'
30193 3' -56.5 NC_006273.1 + 194631 0.66 0.940637
Target:  5'- cUUCCGCUucuUCGGcuCGACAGCCGUc -3'
miRNA:   3'- -AAGGUGGcacAGCUucGCUGUCGGCG- -5'
30193 3' -56.5 NC_006273.1 + 173911 0.66 0.940637
Target:  5'- cUCCAUCGUGUC-AAG-GACGGUgacUGCa -3'
miRNA:   3'- aAGGUGGCACAGcUUCgCUGUCG---GCG- -5'
30193 3' -56.5 NC_006273.1 + 101481 0.66 0.935994
Target:  5'- cUCCGuuCCGUGUCGAcGGCGAgGuuggacuucGCuCGCg -3'
miRNA:   3'- aAGGU--GGCACAGCU-UCGCUgU---------CG-GCG- -5'
30193 3' -56.5 NC_006273.1 + 123050 0.66 0.935994
Target:  5'- gUCgCACCGUuUCGc-GUcGCAGCCGCa -3'
miRNA:   3'- aAG-GUGGCAcAGCuuCGcUGUCGGCG- -5'
30193 3' -56.5 NC_006273.1 + 146010 0.66 0.935994
Target:  5'- gUCCAggUgGUGgCuAAGCGACuGCCGCg -3'
miRNA:   3'- aAGGU--GgCACaGcUUCGCUGuCGGCG- -5'
30193 3' -56.5 NC_006273.1 + 46306 0.66 0.935994
Target:  5'- cUCCGCCGcccgGgcgcaaGAAGCGGCcgccuacGCCGCc -3'
miRNA:   3'- aAGGUGGCa---Cag----CUUCGCUGu------CGGCG- -5'
30193 3' -56.5 NC_006273.1 + 189013 0.66 0.935994
Target:  5'- --gUAUCGgcGUCGggGgccugugcgaCGACAGCCGCg -3'
miRNA:   3'- aagGUGGCa-CAGCuuC----------GCUGUCGGCG- -5'
30193 3' -56.5 NC_006273.1 + 7673 0.66 0.935517
Target:  5'- gUCgGCCGacaUGcCGAugguaugGGCGGCGGCgGCa -3'
miRNA:   3'- aAGgUGGC---ACaGCU-------UCGCUGUCGgCG- -5'
30193 3' -56.5 NC_006273.1 + 173472 0.66 0.931126
Target:  5'- cUCCGCCGccgucgugcuggUGUCgcagGAAGCGGucCAGCUGUu -3'
miRNA:   3'- aAGGUGGC------------ACAG----CUUCGCU--GUCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.