miRNA display CGI


Results 41 - 60 of 164 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30193 3' -56.5 NC_006273.1 + 75261 0.66 0.931126
Target:  5'- --gCGCUG-GcCGccGCGGCGGCCGCc -3'
miRNA:   3'- aagGUGGCaCaGCuuCGCUGUCGGCG- -5'
30193 3' -56.5 NC_006273.1 + 159802 0.66 0.931126
Target:  5'- ---aGCgCGUGUCGAuggccAGCGGCGcgcacagucGCCGCa -3'
miRNA:   3'- aaggUG-GCACAGCU-----UCGCUGU---------CGGCG- -5'
30193 3' -56.5 NC_006273.1 + 173472 0.66 0.931126
Target:  5'- cUCCGCCGccgucgugcuggUGUCgcagGAAGCGGucCAGCUGUu -3'
miRNA:   3'- aAGGUGGC------------ACAG----CUUCGCU--GUCGGCG- -5'
30193 3' -56.5 NC_006273.1 + 132179 0.66 0.930627
Target:  5'- aUCCACCagacguuGUuUCGAuuguGCucGGCGGCCGCa -3'
miRNA:   3'- aAGGUGG-------CAcAGCUu---CG--CUGUCGGCG- -5'
30193 3' -56.5 NC_006273.1 + 188207 0.67 0.928097
Target:  5'- -gCCGCuCGUGgugcCGAcGGCacuucucaggauaauGACAGCCGCa -3'
miRNA:   3'- aaGGUG-GCACa---GCU-UCG---------------CUGUCGGCG- -5'
30193 3' -56.5 NC_006273.1 + 78221 0.67 0.926033
Target:  5'- -gCCGCCGggaaaGAcgGGCGACAGCaCGUu -3'
miRNA:   3'- aaGGUGGCacag-CU--UCGCUGUCG-GCG- -5'
30193 3' -56.5 NC_006273.1 + 164559 0.67 0.926033
Target:  5'- -aCCgGCgGUGUUGGAGCGGC-GCCa- -3'
miRNA:   3'- aaGG-UGgCACAGCUUCGCUGuCGGcg -5'
30193 3' -56.5 NC_006273.1 + 142276 0.67 0.926033
Target:  5'- -cCCGCUGUGcCGAcgucGUGugGGCgGCg -3'
miRNA:   3'- aaGGUGGCACaGCUu---CGCugUCGgCG- -5'
30193 3' -56.5 NC_006273.1 + 73858 0.67 0.926033
Target:  5'- -cCCGCCGU-UCGcguGAGCG-CGGCCGa -3'
miRNA:   3'- aaGGUGGCAcAGC---UUCGCuGUCGGCg -5'
30193 3' -56.5 NC_006273.1 + 94799 0.67 0.926033
Target:  5'- uUUCCgGCUGggGUCGcGGCGGuCGGCCGa -3'
miRNA:   3'- -AAGG-UGGCa-CAGCuUCGCU-GUCGGCg -5'
30193 3' -56.5 NC_006273.1 + 175415 0.67 0.926033
Target:  5'- --aCACCGUGUCGcGGC-ACAguGCCGg -3'
miRNA:   3'- aagGUGGCACAGCuUCGcUGU--CGGCg -5'
30193 3' -56.5 NC_006273.1 + 212005 0.67 0.926033
Target:  5'- -aCCGCUGguaUCGAuGCGgcaggcgaaugcGCAGCCGCu -3'
miRNA:   3'- aaGGUGGCac-AGCUuCGC------------UGUCGGCG- -5'
30193 3' -56.5 NC_006273.1 + 98871 0.67 0.926033
Target:  5'- -aCgGCCGUcUCcagaGAAGCcACAGCCGCu -3'
miRNA:   3'- aaGgUGGCAcAG----CUUCGcUGUCGGCG- -5'
30193 3' -56.5 NC_006273.1 + 94712 0.67 0.920713
Target:  5'- -cCCGCCGUcGUCGccuGCGGCGuuGgCGCa -3'
miRNA:   3'- aaGGUGGCA-CAGCuu-CGCUGU--CgGCG- -5'
30193 3' -56.5 NC_006273.1 + 86569 0.67 0.920713
Target:  5'- -gCCGCCGgccgGUCGcucGCGAaaAGCCGUg -3'
miRNA:   3'- aaGGUGGCa---CAGCuu-CGCUg-UCGGCG- -5'
30193 3' -56.5 NC_006273.1 + 192667 0.67 0.915169
Target:  5'- -gUCGCCGUGU-GgcGCGGCcuGGCCGg -3'
miRNA:   3'- aaGGUGGCACAgCuuCGCUG--UCGGCg -5'
30193 3' -56.5 NC_006273.1 + 214997 0.67 0.915169
Target:  5'- -gCCGCUGcUGUgGcAGCGACcGUCGCa -3'
miRNA:   3'- aaGGUGGC-ACAgCuUCGCUGuCGGCG- -5'
30193 3' -56.5 NC_006273.1 + 133414 0.67 0.915169
Target:  5'- cUgCugCGUGgccgucaagCGAcGCGACGGCgCGCg -3'
miRNA:   3'- aAgGugGCACa--------GCUuCGCUGUCG-GCG- -5'
30193 3' -56.5 NC_006273.1 + 22274 0.67 0.915169
Target:  5'- cUCCGCCGUcGgugCGcucaucuGCGGCAGCgGUa -3'
miRNA:   3'- aAGGUGGCA-Ca--GCuu-----CGCUGUCGgCG- -5'
30193 3' -56.5 NC_006273.1 + 167166 0.67 0.9094
Target:  5'- -gCCGCCGUugGUggccaCGGcgGGCGcaGCGGCCGCg -3'
miRNA:   3'- aaGGUGGCA--CA-----GCU--UCGC--UGUCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.