miRNA display CGI


Results 1 - 20 of 164 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30193 3' -56.5 NC_006273.1 + 1714 0.67 0.897198
Target:  5'- aUCCGCCGcGgCGGuGGCGACugGGCCGa -3'
miRNA:   3'- aAGGUGGCaCaGCU-UCGCUG--UCGGCg -5'
30193 3' -56.5 NC_006273.1 + 1863 0.68 0.870208
Target:  5'- -aCC-CCGcGUCGcuGCuGACGGCCGUg -3'
miRNA:   3'- aaGGuGGCaCAGCuuCG-CUGUCGGCG- -5'
30193 3' -56.5 NC_006273.1 + 2147 0.66 0.949255
Target:  5'- --aCGCgGUGgucggggCGGAcGCGACGGCgGCg -3'
miRNA:   3'- aagGUGgCACa------GCUU-CGCUGUCGgCG- -5'
30193 3' -56.5 NC_006273.1 + 2413 0.68 0.884124
Target:  5'- -gCCGCCGagGcCGc-GCGGCGGCUGCu -3'
miRNA:   3'- aaGGUGGCa-CaGCuuCGCUGUCGGCG- -5'
30193 3' -56.5 NC_006273.1 + 7673 0.66 0.935517
Target:  5'- gUCgGCCGacaUGcCGAugguaugGGCGGCGGCgGCa -3'
miRNA:   3'- aAGgUGGC---ACaGCU-------UCGCUGUCGgCG- -5'
30193 3' -56.5 NC_006273.1 + 8343 0.66 0.945057
Target:  5'- -gCCGCCGUGcCGccgguuGGUGGCuGGCgGCa -3'
miRNA:   3'- aaGGUGGCACaGCu-----UCGCUG-UCGgCG- -5'
30193 3' -56.5 NC_006273.1 + 12162 0.68 0.862945
Target:  5'- -aCCACCGUGUUGcccaGAGU-ACacgGGCCGCg -3'
miRNA:   3'- aaGGUGGCACAGC----UUCGcUG---UCGGCG- -5'
30193 3' -56.5 NC_006273.1 + 17003 0.7 0.771506
Target:  5'- gUUUCGCUGgcucUGUCGAGGCGACcguuuCCGCg -3'
miRNA:   3'- -AAGGUGGC----ACAGCUUCGCUGuc---GGCG- -5'
30193 3' -56.5 NC_006273.1 + 20363 0.66 0.952847
Target:  5'- -cCCACacugcucagacgaCG-GUCGcuGCGACGGUCGCu -3'
miRNA:   3'- aaGGUG-------------GCaCAGCuuCGCUGUCGGCG- -5'
30193 3' -56.5 NC_006273.1 + 22274 0.67 0.915169
Target:  5'- cUCCGCCGUcGgugCGcucaucuGCGGCAGCgGUa -3'
miRNA:   3'- aAGGUGGCA-Ca--GCuu-----CGCUGUCGgCG- -5'
30193 3' -56.5 NC_006273.1 + 29100 0.69 0.831988
Target:  5'- -aCCGCCGUGcUCG-AGCGAagGGUgGCg -3'
miRNA:   3'- aaGGUGGCAC-AGCuUCGCUg-UCGgCG- -5'
30193 3' -56.5 NC_006273.1 + 31229 0.83 0.19337
Target:  5'- -aCCACCGUG-CGggGCGACacgguacgccggguAGCCGCg -3'
miRNA:   3'- aaGGUGGCACaGCuuCGCUG--------------UCGGCG- -5'
30193 3' -56.5 NC_006273.1 + 31278 0.74 0.55716
Target:  5'- -aCCagaGCCGU-UCGggGCGuGCGGCCGCg -3'
miRNA:   3'- aaGG---UGGCAcAGCuuCGC-UGUCGGCG- -5'
30193 3' -56.5 NC_006273.1 + 32396 0.67 0.9094
Target:  5'- -gCCACaCGUGUgGAagacauGGCGACuuuCCGCa -3'
miRNA:   3'- aaGGUG-GCACAgCU------UCGCUGuc-GGCG- -5'
30193 3' -56.5 NC_006273.1 + 33331 0.69 0.831988
Target:  5'- --gCGCCGaGcUGAAcuGCGGCAGCCGCg -3'
miRNA:   3'- aagGUGGCaCaGCUU--CGCUGUCGGCG- -5'
30193 3' -56.5 NC_006273.1 + 33374 0.76 0.462932
Target:  5'- gUCC-CCGUGUCGcAGCGAguGCCa- -3'
miRNA:   3'- aAGGuGGCACAGCuUCGCUguCGGcg -5'
30193 3' -56.5 NC_006273.1 + 36364 0.71 0.743664
Target:  5'- -gCCcCUGagGUCGc-GCGACAGCCGCa -3'
miRNA:   3'- aaGGuGGCa-CAGCuuCGCUGUCGGCG- -5'
30193 3' -56.5 NC_006273.1 + 36908 0.76 0.453955
Target:  5'- aUCCuCCGUGUCGGuccuugugacGGCGaucaGCAGCCGUg -3'
miRNA:   3'- aAGGuGGCACAGCU----------UCGC----UGUCGGCG- -5'
30193 3' -56.5 NC_006273.1 + 37277 0.68 0.870208
Target:  5'- --aCGCCGUGgccgcCGAGcagcccuuGCGACGGCCGg -3'
miRNA:   3'- aagGUGGCACa----GCUU--------CGCUGUCGGCg -5'
30193 3' -56.5 NC_006273.1 + 37702 0.66 0.953235
Target:  5'- -aUCAUCGUaUCGGAGCGcAUAGCUGa -3'
miRNA:   3'- aaGGUGGCAcAGCUUCGC-UGUCGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.