miRNA display CGI


Results 21 - 40 of 164 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30193 3' -56.5 NC_006273.1 + 38084 0.66 0.949255
Target:  5'- -gCCGCCGcG-CGGccucGGCGGCGGgCGCc -3'
miRNA:   3'- aaGGUGGCaCaGCU----UCGCUGUCgGCG- -5'
30193 3' -56.5 NC_006273.1 + 38325 0.66 0.952064
Target:  5'- -gUCGCCGUGUCGucGCcGccaccgucgucgccGCuGCCGCu -3'
miRNA:   3'- aaGGUGGCACAGCuuCG-C--------------UGuCGGCG- -5'
30193 3' -56.5 NC_006273.1 + 38872 0.7 0.780563
Target:  5'- -cCCAgCCG-GUUGcAGCGguACAGCCGCa -3'
miRNA:   3'- aaGGU-GGCaCAGCuUCGC--UGUCGGCG- -5'
30193 3' -56.5 NC_006273.1 + 39117 0.7 0.806948
Target:  5'- aUCCACgCGUccCGcGGCGACAGCUGa -3'
miRNA:   3'- aAGGUG-GCAcaGCuUCGCUGUCGGCg -5'
30193 3' -56.5 NC_006273.1 + 39833 0.68 0.862945
Target:  5'- -cUCAgCGUGUggCGcGGCGGCgAGCCGCu -3'
miRNA:   3'- aaGGUgGCACA--GCuUCGCUG-UCGGCG- -5'
30193 3' -56.5 NC_006273.1 + 40483 0.71 0.724629
Target:  5'- -gUCGgCGUgGUCGAGGCGGCccGGCUGCu -3'
miRNA:   3'- aaGGUgGCA-CAGCUUCGCUG--UCGGCG- -5'
30193 3' -56.5 NC_006273.1 + 42050 0.7 0.762331
Target:  5'- -cCCGguuuaCGUGUCgGggGCGGCGGuuGCu -3'
miRNA:   3'- aaGGUg----GCACAG-CuuCGCUGUCggCG- -5'
30193 3' -56.5 NC_006273.1 + 44442 0.66 0.945057
Target:  5'- --gCACCGUGcccCGAGGCGGCgacgGGCUaGCg -3'
miRNA:   3'- aagGUGGCACa--GCUUCGCUG----UCGG-CG- -5'
30193 3' -56.5 NC_006273.1 + 45587 0.69 0.847836
Target:  5'- -gCUGCCGUG-C-AGGCGGCcauGGCCGCg -3'
miRNA:   3'- aaGGUGGCACaGcUUCGCUG---UCGGCG- -5'
30193 3' -56.5 NC_006273.1 + 46306 0.66 0.935994
Target:  5'- cUCCGCCGcccgGgcgcaaGAAGCGGCcgccuacGCCGCc -3'
miRNA:   3'- aAGGUGGCa---Cag----CUUCGCUGu------CGGCG- -5'
30193 3' -56.5 NC_006273.1 + 50019 0.66 0.945057
Target:  5'- gUCC-CCGgcUCGGauGGCGauGCAGCCGUa -3'
miRNA:   3'- aAGGuGGCacAGCU--UCGC--UGUCGGCG- -5'
30193 3' -56.5 NC_006273.1 + 55629 0.66 0.931126
Target:  5'- -gCCGCCGgucUCGAAGCGGacaUAGCC-Ca -3'
miRNA:   3'- aaGGUGGCac-AGCUUCGCU---GUCGGcG- -5'
30193 3' -56.5 NC_006273.1 + 59472 0.67 0.908811
Target:  5'- -cCCACgGUagacauggugaagGUgGAcAGCGACAGCUGCc -3'
miRNA:   3'- aaGGUGgCA-------------CAgCU-UCGCUGUCGGCG- -5'
30193 3' -56.5 NC_006273.1 + 61220 0.7 0.806948
Target:  5'- -cCCAgCGUcUCGAGGCGGCGGUgcaGCa -3'
miRNA:   3'- aaGGUgGCAcAGCUUCGCUGUCGg--CG- -5'
30193 3' -56.5 NC_006273.1 + 62348 0.66 0.945057
Target:  5'- -aCUACCGU-UCGGuuaacGGCGAUuuGGCCGUg -3'
miRNA:   3'- aaGGUGGCAcAGCU-----UCGCUG--UCGGCG- -5'
30193 3' -56.5 NC_006273.1 + 63819 0.71 0.743664
Target:  5'- cUUCCACCGg--C--AGCGGCAcGCCGCg -3'
miRNA:   3'- -AAGGUGGCacaGcuUCGCUGU-CGGCG- -5'
30193 3' -56.5 NC_006273.1 + 66050 0.7 0.780563
Target:  5'- aUCCACUuUGUCGAAGauaGugAGCUGg -3'
miRNA:   3'- aAGGUGGcACAGCUUCg--CugUCGGCg -5'
30193 3' -56.5 NC_006273.1 + 68084 0.66 0.949255
Target:  5'- -gCCGCUGUGgcCGGAGUGcCcgucGCCGCa -3'
miRNA:   3'- aaGGUGGCACa-GCUUCGCuGu---CGGCG- -5'
30193 3' -56.5 NC_006273.1 + 68771 0.69 0.823803
Target:  5'- -cCCACCuca-UGAAGCGGCGGCgGCg -3'
miRNA:   3'- aaGGUGGcacaGCUUCGCUGUCGgCG- -5'
30193 3' -56.5 NC_006273.1 + 70925 0.69 0.855486
Target:  5'- -gCCGCCGcGcCGAcaucgucaucgAGCGGCcgcGGCCGCa -3'
miRNA:   3'- aaGGUGGCaCaGCU-----------UCGCUG---UCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.