miRNA display CGI


Results 1 - 20 of 164 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30193 3' -56.5 NC_006273.1 + 234010 0.7 0.806948
Target:  5'- aUCCACgCGUccCGcGGCGACAGCUGa -3'
miRNA:   3'- aAGGUG-GCAcaGCuUCGCUGUCGGCg -5'
30193 3' -56.5 NC_006273.1 + 233764 0.7 0.780563
Target:  5'- -cCCAgCCG-GUUGcAGCGguACAGCCGCa -3'
miRNA:   3'- aaGGU-GGCaCAGCuUCGC--UGUCGGCG- -5'
30193 3' -56.5 NC_006273.1 + 232977 0.66 0.949255
Target:  5'- -gCCGCCGcG-CGGccucGGCGGCGGgCGCc -3'
miRNA:   3'- aaGGUGGCaCaGCU----UCGCUGUCgGCG- -5'
30193 3' -56.5 NC_006273.1 + 231707 0.71 0.753048
Target:  5'- aUCC-CCGgGUCGgcGuCGGCAuGCCGCu -3'
miRNA:   3'- aAGGuGGCaCAGCuuC-GCUGU-CGGCG- -5'
30193 3' -56.5 NC_006273.1 + 227342 0.7 0.789494
Target:  5'- gUCgGCCGUGgaGAGGCGuC-GCCGCg -3'
miRNA:   3'- aAGgUGGCACagCUUCGCuGuCGGCG- -5'
30193 3' -56.5 NC_006273.1 + 223306 0.66 0.948845
Target:  5'- -cCCAgggCGUuUCGGgcccgucGGUGACAGCCGCg -3'
miRNA:   3'- aaGGUg--GCAcAGCU-------UCGCUGUCGGCG- -5'
30193 3' -56.5 NC_006273.1 + 216597 0.74 0.586603
Target:  5'- aUCCGCg--GUCGAAGCGGCAGagaccaCGCa -3'
miRNA:   3'- aAGGUGgcaCAGCUUCGCUGUCg-----GCG- -5'
30193 3' -56.5 NC_006273.1 + 215534 0.69 0.855486
Target:  5'- gUUUCGCCGUGUCauaacCGAC-GCCGCu -3'
miRNA:   3'- -AAGGUGGCACAGcuuc-GCUGuCGGCG- -5'
30193 3' -56.5 NC_006273.1 + 214997 0.67 0.915169
Target:  5'- -gCCGCUGcUGUgGcAGCGACcGUCGCa -3'
miRNA:   3'- aaGGUGGC-ACAgCuUCGCUGuCGGCG- -5'
30193 3' -56.5 NC_006273.1 + 214944 0.7 0.789494
Target:  5'- gUCCaACCGUGgcacCGuAGGCGgaACAGCUGCc -3'
miRNA:   3'- aAGG-UGGCACa---GC-UUCGC--UGUCGGCG- -5'
30193 3' -56.5 NC_006273.1 + 212411 0.72 0.665986
Target:  5'- gUCCGCCGUGUUucucGGCGuACuGCUGCa -3'
miRNA:   3'- aAGGUGGCACAGcu--UCGC-UGuCGGCG- -5'
30193 3' -56.5 NC_006273.1 + 212005 0.67 0.926033
Target:  5'- -aCCGCUGguaUCGAuGCGgcaggcgaaugcGCAGCCGCu -3'
miRNA:   3'- aaGGUGGCac-AGCUuCGC------------UGUCGGCG- -5'
30193 3' -56.5 NC_006273.1 + 210418 0.74 0.547436
Target:  5'- -cCCACCGUGcuguaGAAGCccaaaaGCAGCCGCa -3'
miRNA:   3'- aaGGUGGCACag---CUUCGc-----UGUCGGCG- -5'
30193 3' -56.5 NC_006273.1 + 203310 0.67 0.903409
Target:  5'- gUUCgACCGgaaugUGUCGAcuCGAgGGCUGCg -3'
miRNA:   3'- -AAGgUGGC-----ACAGCUucGCUgUCGGCG- -5'
30193 3' -56.5 NC_006273.1 + 203082 0.68 0.870208
Target:  5'- aUUCC-CCGcUGUC---GCGGCGGUCGCg -3'
miRNA:   3'- -AAGGuGGC-ACAGcuuCGCUGUCGGCG- -5'
30193 3' -56.5 NC_006273.1 + 198872 0.68 0.884124
Target:  5'- gUCCGCCG-GUCu---CGACGGaCCGCg -3'
miRNA:   3'- aAGGUGGCaCAGcuucGCUGUC-GGCG- -5'
30193 3' -56.5 NC_006273.1 + 197657 0.72 0.705292
Target:  5'- --aCGCUGcGUCGGuuucuacgcGGCGACAGCUGCu -3'
miRNA:   3'- aagGUGGCaCAGCU---------UCGCUGUCGGCG- -5'
30193 3' -56.5 NC_006273.1 + 197306 0.68 0.884124
Target:  5'- -gCCGCCGagGcCGc-GCGGCGGCUGCu -3'
miRNA:   3'- aaGGUGGCa-CaGCuuCGCUGUCGGCG- -5'
30193 3' -56.5 NC_006273.1 + 197179 0.68 0.890768
Target:  5'- uUUCCGCCGUcucCGGA-UGAgCGGCCGCg -3'
miRNA:   3'- -AAGGUGGCAca-GCUUcGCU-GUCGGCG- -5'
30193 3' -56.5 NC_006273.1 + 197040 0.66 0.949255
Target:  5'- --aCGCgGUGgucggggCGGAcGCGACGGCgGCg -3'
miRNA:   3'- aagGUGgCACa------GCUU-CGCUGUCGgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.