miRNA display CGI


Results 1 - 20 of 164 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30193 3' -56.5 NC_006273.1 + 61220 0.7 0.806948
Target:  5'- -cCCAgCGUcUCGAGGCGGCGGUgcaGCa -3'
miRNA:   3'- aaGGUgGCAcAGCUUCGCUGUCGg--CG- -5'
30193 3' -56.5 NC_006273.1 + 40483 0.71 0.724629
Target:  5'- -gUCGgCGUgGUCGAGGCGGCccGGCUGCu -3'
miRNA:   3'- aaGGUgGCA-CAGCUUCGCUG--UCGGCG- -5'
30193 3' -56.5 NC_006273.1 + 36364 0.71 0.743664
Target:  5'- -gCCcCUGagGUCGc-GCGACAGCCGCa -3'
miRNA:   3'- aaGGuGGCa-CAGCuuCGCUGUCGGCG- -5'
30193 3' -56.5 NC_006273.1 + 162228 0.71 0.743664
Target:  5'- cUCCGCCGUcugcguguccucGUUG-GGUGGCAGCgGCg -3'
miRNA:   3'- aAGGUGGCA------------CAGCuUCGCUGUCGgCG- -5'
30193 3' -56.5 NC_006273.1 + 162351 0.7 0.762331
Target:  5'- gUCUGCCGguggugGUgGAGGCGGCGG-CGCu -3'
miRNA:   3'- aAGGUGGCa-----CAgCUUCGCUGUCgGCG- -5'
30193 3' -56.5 NC_006273.1 + 42050 0.7 0.762331
Target:  5'- -cCCGguuuaCGUGUCgGggGCGGCGGuuGCu -3'
miRNA:   3'- aaGGUg----GCACAG-CuuCGCUGUCggCG- -5'
30193 3' -56.5 NC_006273.1 + 102113 0.7 0.779663
Target:  5'- -gCCGcugcaaguCCGUGUCGGaaaucgcAGCGGCAGUgGCg -3'
miRNA:   3'- aaGGU--------GGCACAGCU-------UCGCUGUCGgCG- -5'
30193 3' -56.5 NC_006273.1 + 233764 0.7 0.780563
Target:  5'- -cCCAgCCG-GUUGcAGCGguACAGCCGCa -3'
miRNA:   3'- aaGGU-GGCaCAGCuUCGC--UGUCGGCG- -5'
30193 3' -56.5 NC_006273.1 + 78491 0.7 0.780563
Target:  5'- -aUCACCGuUGUCGGAggaacccuGCGGC-GCCGCc -3'
miRNA:   3'- aaGGUGGC-ACAGCUU--------CGCUGuCGGCG- -5'
30193 3' -56.5 NC_006273.1 + 105143 0.71 0.724629
Target:  5'- -gCCACCGgcgGUCGuucagggggaAAGCGGCGuCCGCg -3'
miRNA:   3'- aaGGUGGCa--CAGC----------UUCGCUGUcGGCG- -5'
30193 3' -56.5 NC_006273.1 + 104245 0.71 0.724629
Target:  5'- -gCCGCCGUGUUcGGGCGAgAGCacggGCg -3'
miRNA:   3'- aaGGUGGCACAGcUUCGCUgUCGg---CG- -5'
30193 3' -56.5 NC_006273.1 + 212411 0.72 0.665986
Target:  5'- gUCCGCCGUGUUucucGGCGuACuGCUGCa -3'
miRNA:   3'- aAGGUGGCACAGcu--UCGC-UGuCGGCG- -5'
30193 3' -56.5 NC_006273.1 + 117189 0.83 0.190115
Target:  5'- gUCCGCCGagcGUUcGGGCGACAGCCGCa -3'
miRNA:   3'- aAGGUGGCa--CAGcUUCGCUGUCGGCG- -5'
30193 3' -56.5 NC_006273.1 + 31229 0.83 0.19337
Target:  5'- -aCCACCGUG-CGggGCGACacgguacgccggguAGCCGCg -3'
miRNA:   3'- aaGGUGGCACaGCuuCGCUG--------------UCGGCG- -5'
30193 3' -56.5 NC_006273.1 + 126342 0.78 0.38578
Target:  5'- gUCCACCucgaagGUGUCGguGCGuACGGCCGUg -3'
miRNA:   3'- aAGGUGG------CACAGCuuCGC-UGUCGGCG- -5'
30193 3' -56.5 NC_006273.1 + 33374 0.76 0.462932
Target:  5'- gUCC-CCGUGUCGcAGCGAguGCCa- -3'
miRNA:   3'- aAGGuGGCACAGCuUCGCUguCGGcg -5'
30193 3' -56.5 NC_006273.1 + 210418 0.74 0.547436
Target:  5'- -cCCACCGUGcuguaGAAGCccaaaaGCAGCCGCa -3'
miRNA:   3'- aaGGUGGCACag---CUUCGc-----UGUCGGCG- -5'
30193 3' -56.5 NC_006273.1 + 31278 0.74 0.55716
Target:  5'- -aCCagaGCCGU-UCGggGCGuGCGGCCGCg -3'
miRNA:   3'- aaGG---UGGCAcAGCuuCGC-UGUCGGCG- -5'
30193 3' -56.5 NC_006273.1 + 162452 0.74 0.561063
Target:  5'- aUCC-CCG-GUUGAugaaccggcagaaggAGCGGCGGCCGCc -3'
miRNA:   3'- aAGGuGGCaCAGCU---------------UCGCUGUCGGCG- -5'
30193 3' -56.5 NC_006273.1 + 216597 0.74 0.586603
Target:  5'- aUCCGCg--GUCGAAGCGGCAGagaccaCGCa -3'
miRNA:   3'- aAGGUGgcaCAGCUUCGCUGUCg-----GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.