miRNA display CGI


Results 1 - 20 of 164 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30193 3' -56.5 NC_006273.1 + 82035 0.78 0.369823
Target:  5'- -gCCGCCGgccucgGaCGAAGCGGCAGCgGCg -3'
miRNA:   3'- aaGGUGGCa-----CaGCUUCGCUGUCGgCG- -5'
30193 3' -56.5 NC_006273.1 + 38872 0.7 0.780563
Target:  5'- -cCCAgCCG-GUUGcAGCGguACAGCCGCa -3'
miRNA:   3'- aaGGU-GGCaCAGCuUCGC--UGUCGGCG- -5'
30193 3' -56.5 NC_006273.1 + 130257 0.7 0.789494
Target:  5'- -aCCGCCGguggcGUCGGuGGUGcaaccgucGCAGCCGCg -3'
miRNA:   3'- aaGGUGGCa----CAGCU-UCGC--------UGUCGGCG- -5'
30193 3' -56.5 NC_006273.1 + 37702 0.66 0.953235
Target:  5'- -aUCAUCGUaUCGGAGCGcAUAGCUGa -3'
miRNA:   3'- aaGGUGGCAcAGCUUCGC-UGUCGGCg -5'
30193 3' -56.5 NC_006273.1 + 86516 0.73 0.596487
Target:  5'- uUUUCACCGUcgccGUCGucacGCGGCAGCgGCg -3'
miRNA:   3'- -AAGGUGGCA----CAGCuu--CGCUGUCGgCG- -5'
30193 3' -56.5 NC_006273.1 + 164457 0.72 0.655082
Target:  5'- -gCCGCuCGaugacgaUGUCGgcGCGGCGGCUGCu -3'
miRNA:   3'- aaGGUG-GC-------ACAGCuuCGCUGUCGGCG- -5'
30193 3' -56.5 NC_006273.1 + 113106 0.72 0.675871
Target:  5'- gUUCCGCguuugGUCGccugccuauguaAGGCGGCGGCCGCa -3'
miRNA:   3'- -AAGGUGgca--CAGC------------UUCGCUGUCGGCG- -5'
30193 3' -56.5 NC_006273.1 + 197657 0.72 0.705292
Target:  5'- --aCGCUGcGUCGGuuucuacgcGGCGACAGCUGCu -3'
miRNA:   3'- aagGUGGCaCAGCU---------UCGCUGUCGGCG- -5'
30193 3' -56.5 NC_006273.1 + 71461 0.71 0.743664
Target:  5'- --aCGCCGcGaUCGAGGCGGCGGCgauCGCa -3'
miRNA:   3'- aagGUGGCaC-AGCUUCGCUGUCG---GCG- -5'
30193 3' -56.5 NC_006273.1 + 17003 0.7 0.771506
Target:  5'- gUUUCGCUGgcucUGUCGAGGCGACcguuuCCGCg -3'
miRNA:   3'- -AAGGUGGC----ACAGCUUCGCUGuc---GGCG- -5'
30193 3' -56.5 NC_006273.1 + 140570 0.71 0.753048
Target:  5'- -cCUACCGUcGUCGucGGcCGACcGCCGCg -3'
miRNA:   3'- aaGGUGGCA-CAGCu-UC-GCUGuCGGCG- -5'
30193 3' -56.5 NC_006273.1 + 154910 0.71 0.743664
Target:  5'- -cCCGCCGUGgguuuuAAGCGGCAguacGCCGCc -3'
miRNA:   3'- aaGGUGGCACagc---UUCGCUGU----CGGCG- -5'
30193 3' -56.5 NC_006273.1 + 36908 0.76 0.453955
Target:  5'- aUCCuCCGUGUCGGuccuugugacGGCGaucaGCAGCCGUg -3'
miRNA:   3'- aAGGuGGCACAGCU----------UCGC----UGUCGGCG- -5'
30193 3' -56.5 NC_006273.1 + 231707 0.71 0.753048
Target:  5'- aUCC-CCGgGUCGgcGuCGGCAuGCCGCu -3'
miRNA:   3'- aAGGuGGCaCAGCuuC-GCUGU-CGGCG- -5'
30193 3' -56.5 NC_006273.1 + 90974 0.74 0.586603
Target:  5'- gUCCGCCGccgCGGcgccgGGCaGACAGCCGCu -3'
miRNA:   3'- aAGGUGGCacaGCU-----UCG-CUGUCGGCG- -5'
30193 3' -56.5 NC_006273.1 + 63819 0.71 0.743664
Target:  5'- cUUCCACCGg--C--AGCGGCAcGCCGCg -3'
miRNA:   3'- -AAGGUGGCacaGcuUCGCUGU-CGGCG- -5'
30193 3' -56.5 NC_006273.1 + 160112 0.7 0.771506
Target:  5'- aUUCACC-UGguaUGAGGCGGCcGCCGCg -3'
miRNA:   3'- aAGGUGGcACa--GCUUCGCUGuCGGCG- -5'
30193 3' -56.5 NC_006273.1 + 66050 0.7 0.780563
Target:  5'- aUCCACUuUGUCGAAGauaGugAGCUGg -3'
miRNA:   3'- aAGGUGGcACAGCUUCg--CugUCGGCg -5'
30193 3' -56.5 NC_006273.1 + 104604 0.73 0.595497
Target:  5'- -aCCACCG--UCGAuucugacGGUGAUAGCCGCg -3'
miRNA:   3'- aaGGUGGCacAGCU-------UCGCUGUCGGCG- -5'
30193 3' -56.5 NC_006273.1 + 89355 0.72 0.656074
Target:  5'- gUCCugGgUGUGUCGGGccGCGGCAGUCGCu -3'
miRNA:   3'- aAGG--UgGCACAGCUU--CGCUGUCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.