miRNA display CGI


Results 1 - 20 of 82 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30193 5' -59.7 NC_006273.1 + 94888 0.66 0.877259
Target:  5'- gGCAgucGGUCCCGgaaggUUGGgGGCUGGgGGc -3'
miRNA:   3'- -UGUa--CCGGGGCa----AGUUgCCGGCCgCC- -5'
30193 5' -59.7 NC_006273.1 + 46559 0.66 0.870424
Target:  5'- gGCGUGcccaGCCCCGUauacgcacUCGA-GGCCuuGGUGGa -3'
miRNA:   3'- -UGUAC----CGGGGCA--------AGUUgCCGG--CCGCC- -5'
30193 5' -59.7 NC_006273.1 + 167260 0.66 0.870424
Target:  5'- gGCGUGGUgaCCGU--GGCGG-UGGCGGg -3'
miRNA:   3'- -UGUACCGg-GGCAagUUGCCgGCCGCC- -5'
30193 5' -59.7 NC_006273.1 + 34241 0.66 0.870424
Target:  5'- cACAgGGCCgCCGgcaggCAGCGGCCGaugaguucGCGc -3'
miRNA:   3'- -UGUaCCGG-GGCaa---GUUGCCGGC--------CGCc -5'
30193 5' -59.7 NC_006273.1 + 44636 0.66 0.863399
Target:  5'- -uGUGGUa-CGUUCGGCGGCagcuGGUGGc -3'
miRNA:   3'- ugUACCGggGCAAGUUGCCGg---CCGCC- -5'
30193 5' -59.7 NC_006273.1 + 179269 0.66 0.863399
Target:  5'- ---cGGCCCguUUCGACGaaauCCGGCGGc -3'
miRNA:   3'- uguaCCGGGgcAAGUUGCc---GGCCGCC- -5'
30193 5' -59.7 NC_006273.1 + 1429 0.66 0.863399
Target:  5'- -gGUGGaCCCCGcggccgaccCGACGGUgGGCGa -3'
miRNA:   3'- ugUACC-GGGGCaa-------GUUGCCGgCCGCc -5'
30193 5' -59.7 NC_006273.1 + 196322 0.66 0.863399
Target:  5'- -gGUGGaCCCCGcggccgaccCGACGGUgGGCGa -3'
miRNA:   3'- ugUACC-GGGGCaa-------GUUGCCGgCCGCc -5'
30193 5' -59.7 NC_006273.1 + 45227 0.66 0.863399
Target:  5'- gACAUGGUCCaauacgGUcaUCGACGGCgucccggacaCGGCGa -3'
miRNA:   3'- -UGUACCGGGg-----CA--AGUUGCCG----------GCCGCc -5'
30193 5' -59.7 NC_006273.1 + 84052 0.66 0.863399
Target:  5'- -aAUGaGCCgCGa--AGCGGCgGGCGGa -3'
miRNA:   3'- ugUAC-CGGgGCaagUUGCCGgCCGCC- -5'
30193 5' -59.7 NC_006273.1 + 38619 0.66 0.85619
Target:  5'- cACAUGGaCCCCGagCAGgacuaucguCuGCCGGCGc -3'
miRNA:   3'- -UGUACC-GGGGCaaGUU---------GcCGGCCGCc -5'
30193 5' -59.7 NC_006273.1 + 167150 0.66 0.85619
Target:  5'- gACG-GGCCgCUGgaagUCGGCGGgCGGgGGc -3'
miRNA:   3'- -UGUaCCGG-GGCa---AGUUGCCgGCCgCC- -5'
30193 5' -59.7 NC_006273.1 + 150771 0.66 0.85619
Target:  5'- cGCcgGGCgCUGUggugCAGCaGCCGGCc- -3'
miRNA:   3'- -UGuaCCGgGGCAa---GUUGcCGGCCGcc -5'
30193 5' -59.7 NC_006273.1 + 83320 0.66 0.85619
Target:  5'- cGCGUGGUccggguggaCCCGgcgUgGugGGacCCGGCGGc -3'
miRNA:   3'- -UGUACCG---------GGGCa--AgUugCC--GGCCGCC- -5'
30193 5' -59.7 NC_006273.1 + 36275 0.66 0.848801
Target:  5'- --uUGGCCUCGUaCAGCGaGCU-GCGGu -3'
miRNA:   3'- uguACCGGGGCAaGUUGC-CGGcCGCC- -5'
30193 5' -59.7 NC_006273.1 + 128167 0.66 0.848801
Target:  5'- gGCAcGGUCCCgGUUUAGCagguaGGCCguGGUGGg -3'
miRNA:   3'- -UGUaCCGGGG-CAAGUUG-----CCGG--CCGCC- -5'
30193 5' -59.7 NC_006273.1 + 114431 0.66 0.848801
Target:  5'- aGCGUaagacGCCCCGcgUCAcCGGC-GGCGGc -3'
miRNA:   3'- -UGUAc----CGGGGCa-AGUuGCCGgCCGCC- -5'
30193 5' -59.7 NC_006273.1 + 1646 0.66 0.848801
Target:  5'- gGCGUGGgcaCCCCGcgcgCGACGcugcugccucaGCCGGCGc -3'
miRNA:   3'- -UGUACC---GGGGCaa--GUUGC-----------CGGCCGCc -5'
30193 5' -59.7 NC_006273.1 + 158645 0.66 0.848801
Target:  5'- aGCAcGGCCUCGUUggUGACGcggauguuGCCGGCGc -3'
miRNA:   3'- -UGUaCCGGGGCAA--GUUGC--------CGGCCGCc -5'
30193 5' -59.7 NC_006273.1 + 76695 0.66 0.848801
Target:  5'- cGCGUGuGCCCUGccUC-ACGGCUGGUc- -3'
miRNA:   3'- -UGUAC-CGGGGCa-AGuUGCCGGCCGcc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.