Results 1 - 20 of 82 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
30193 | 5' | -59.7 | NC_006273.1 | + | 150771 | 0.66 | 0.85619 |
Target: 5'- cGCcgGGCgCUGUggugCAGCaGCCGGCc- -3' miRNA: 3'- -UGuaCCGgGGCAa---GUUGcCGGCCGcc -5' |
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30193 | 5' | -59.7 | NC_006273.1 | + | 44636 | 0.66 | 0.863399 |
Target: 5'- -uGUGGUa-CGUUCGGCGGCagcuGGUGGc -3' miRNA: 3'- ugUACCGggGCAAGUUGCCGg---CCGCC- -5' |
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30193 | 5' | -59.7 | NC_006273.1 | + | 112178 | 0.66 | 0.848053 |
Target: 5'- aACGUGcugcgcuGCCCCGagcgcgugcUUCGGCGGUugcuggaggacgCGGCGGu -3' miRNA: 3'- -UGUAC-------CGGGGC---------AAGUUGCCG------------GCCGCC- -5' |
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30193 | 5' | -59.7 | NC_006273.1 | + | 36275 | 0.66 | 0.848801 |
Target: 5'- --uUGGCCUCGUaCAGCGaGCU-GCGGu -3' miRNA: 3'- uguACCGGGGCAaGUUGC-CGGcCGCC- -5' |
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30193 | 5' | -59.7 | NC_006273.1 | + | 128167 | 0.66 | 0.848801 |
Target: 5'- gGCAcGGUCCCgGUUUAGCagguaGGCCguGGUGGg -3' miRNA: 3'- -UGUaCCGGGG-CAAGUUG-----CCGG--CCGCC- -5' |
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30193 | 5' | -59.7 | NC_006273.1 | + | 196539 | 0.66 | 0.848801 |
Target: 5'- gGCGUGGgcaCCCCGcgcgCGACGcugcugccucaGCCGGCGc -3' miRNA: 3'- -UGUACC---GGGGCaa--GUUGC-----------CGGCCGCc -5' |
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30193 | 5' | -59.7 | NC_006273.1 | + | 38619 | 0.66 | 0.85619 |
Target: 5'- cACAUGGaCCCCGagCAGgacuaucguCuGCCGGCGc -3' miRNA: 3'- -UGUACC-GGGGCaaGUU---------GcCGGCCGCc -5' |
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30193 | 5' | -59.7 | NC_006273.1 | + | 34241 | 0.66 | 0.870424 |
Target: 5'- cACAgGGCCgCCGgcaggCAGCGGCCGaugaguucGCGc -3' miRNA: 3'- -UGUaCCGG-GGCaa---GUUGCCGGC--------CGCc -5' |
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30193 | 5' | -59.7 | NC_006273.1 | + | 46559 | 0.66 | 0.870424 |
Target: 5'- gGCGUGcccaGCCCCGUauacgcacUCGA-GGCCuuGGUGGa -3' miRNA: 3'- -UGUAC----CGGGGCA--------AGUUgCCGG--CCGCC- -5' |
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30193 | 5' | -59.7 | NC_006273.1 | + | 179269 | 0.66 | 0.863399 |
Target: 5'- ---cGGCCCguUUCGACGaaauCCGGCGGc -3' miRNA: 3'- uguaCCGGGgcAAGUUGCc---GGCCGCC- -5' |
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30193 | 5' | -59.7 | NC_006273.1 | + | 83320 | 0.66 | 0.85619 |
Target: 5'- cGCGUGGUccggguggaCCCGgcgUgGugGGacCCGGCGGc -3' miRNA: 3'- -UGUACCG---------GGGCa--AgUugCC--GGCCGCC- -5' |
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30193 | 5' | -59.7 | NC_006273.1 | + | 45227 | 0.66 | 0.863399 |
Target: 5'- gACAUGGUCCaauacgGUcaUCGACGGCgucccggacaCGGCGa -3' miRNA: 3'- -UGUACCGGGg-----CA--AGUUGCCG----------GCCGCc -5' |
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30193 | 5' | -59.7 | NC_006273.1 | + | 1646 | 0.66 | 0.848801 |
Target: 5'- gGCGUGGgcaCCCCGcgcgCGACGcugcugccucaGCCGGCGc -3' miRNA: 3'- -UGUACC---GGGGCaa--GUUGC-----------CGGCCGCc -5' |
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30193 | 5' | -59.7 | NC_006273.1 | + | 167260 | 0.66 | 0.870424 |
Target: 5'- gGCGUGGUgaCCGU--GGCGG-UGGCGGg -3' miRNA: 3'- -UGUACCGg-GGCAagUUGCCgGCCGCC- -5' |
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30193 | 5' | -59.7 | NC_006273.1 | + | 196322 | 0.66 | 0.863399 |
Target: 5'- -gGUGGaCCCCGcggccgaccCGACGGUgGGCGa -3' miRNA: 3'- ugUACC-GGGGCaa-------GUUGCCGgCCGCc -5' |
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30193 | 5' | -59.7 | NC_006273.1 | + | 1429 | 0.66 | 0.863399 |
Target: 5'- -gGUGGaCCCCGcggccgaccCGACGGUgGGCGa -3' miRNA: 3'- ugUACC-GGGGCaa-------GUUGCCGgCCGCc -5' |
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30193 | 5' | -59.7 | NC_006273.1 | + | 158645 | 0.66 | 0.848801 |
Target: 5'- aGCAcGGCCUCGUUggUGACGcggauguuGCCGGCGc -3' miRNA: 3'- -UGUaCCGGGGCAA--GUUGC--------CGGCCGCc -5' |
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30193 | 5' | -59.7 | NC_006273.1 | + | 76695 | 0.66 | 0.848801 |
Target: 5'- cGCGUGuGCCCUGccUC-ACGGCUGGUc- -3' miRNA: 3'- -UGUAC-CGGGGCa-AGuUGCCGGCCGcc -5' |
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30193 | 5' | -59.7 | NC_006273.1 | + | 167150 | 0.66 | 0.85619 |
Target: 5'- gACG-GGCCgCUGgaagUCGGCGGgCGGgGGc -3' miRNA: 3'- -UGUaCCGG-GGCa---AGUUGCCgGCCgCC- -5' |
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30193 | 5' | -59.7 | NC_006273.1 | + | 114431 | 0.66 | 0.848801 |
Target: 5'- aGCGUaagacGCCCCGcgUCAcCGGC-GGCGGc -3' miRNA: 3'- -UGUAc----CGGGGCa-AGUuGCCGgCCGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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