miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30193 5' -59.7 NC_006273.1 + 188125 1.1 0.00209
Target:  5'- uACAUGGCCCCGUUCAACGGCCGGCGGg -3'
miRNA:   3'- -UGUACCGGGGCAAGUUGCCGGCCGCC- -5'
30193 5' -59.7 NC_006273.1 + 116851 0.75 0.368486
Target:  5'- cACGUGGCUuuGUgcagCGugGGUCGGCGu -3'
miRNA:   3'- -UGUACCGGggCAa---GUugCCGGCCGCc -5'
30193 5' -59.7 NC_006273.1 + 230851 0.74 0.424238
Target:  5'- gGC-UGGUCCUGgggaacgggUCGGCGGCCGGuCGGc -3'
miRNA:   3'- -UGuACCGGGGCa--------AGUUGCCGGCC-GCC- -5'
30193 5' -59.7 NC_006273.1 + 129306 0.74 0.44107
Target:  5'- --cUGGCuCCCGggUAccGCGGCCGGCGu -3'
miRNA:   3'- uguACCG-GGGCaaGU--UGCCGGCCGCc -5'
30193 5' -59.7 NC_006273.1 + 140759 0.73 0.484734
Target:  5'- cCcgGGUCCCGUccguUCcGCGGCgGGUGGa -3'
miRNA:   3'- uGuaCCGGGGCA----AGuUGCCGgCCGCC- -5'
30193 5' -59.7 NC_006273.1 + 19408 0.73 0.493716
Target:  5'- ---aGGCCUgGUUaCAgcGCGGCCGGCGa -3'
miRNA:   3'- uguaCCGGGgCAA-GU--UGCCGGCCGCc -5'
30193 5' -59.7 NC_006273.1 + 120568 0.73 0.493716
Target:  5'- uGCAUGGCCCgGgcaaGGCGucuuGCCGGUGGc -3'
miRNA:   3'- -UGUACCGGGgCaag-UUGC----CGGCCGCC- -5'
30193 5' -59.7 NC_006273.1 + 145552 0.72 0.521099
Target:  5'- gACggGGUUCCGggCGGCGGUgcUGGCGGg -3'
miRNA:   3'- -UGuaCCGGGGCaaGUUGCCG--GCCGCC- -5'
30193 5' -59.7 NC_006273.1 + 33231 0.72 0.530359
Target:  5'- cGCAccgagGGCCCCGg--GGCGGCgacgaCGGCGGg -3'
miRNA:   3'- -UGUa----CCGGGGCaagUUGCCG-----GCCGCC- -5'
30193 5' -59.7 NC_006273.1 + 218191 0.72 0.539679
Target:  5'- cGCGUGGCa-UGggCGGCGGCCgacGGCGGa -3'
miRNA:   3'- -UGUACCGggGCaaGUUGCCGG---CCGCC- -5'
30193 5' -59.7 NC_006273.1 + 167204 0.72 0.558478
Target:  5'- ---aGGCCggCGUaaacagcgUCAGCGGCCGGUGGu -3'
miRNA:   3'- uguaCCGGg-GCA--------AGUUGCCGGCCGCC- -5'
30193 5' -59.7 NC_006273.1 + 114181 0.71 0.584135
Target:  5'- cACAUGGgCCCGUUCGAaggcuacucuauguCGGCCGaucGCGc -3'
miRNA:   3'- -UGUACCgGGGCAAGUU--------------GCCGGC---CGCc -5'
30193 5' -59.7 NC_006273.1 + 184398 0.71 0.587002
Target:  5'- -aGUGGCCCagggagacauccCGgugUCuauguCGGCCGGCGGu -3'
miRNA:   3'- ugUACCGGG------------GCa--AGuu---GCCGGCCGCC- -5'
30193 5' -59.7 NC_006273.1 + 25446 0.71 0.596575
Target:  5'- cUAUGGCgCCGUggguuggCAGCuGGCCGGCu- -3'
miRNA:   3'- uGUACCGgGGCAa------GUUG-CCGGCCGcc -5'
30193 5' -59.7 NC_006273.1 + 189045 0.71 0.606171
Target:  5'- cGCGUGGUgggggCCCGgacCGGCGGCguaGGCGGc -3'
miRNA:   3'- -UGUACCG-----GGGCaa-GUUGCCGg--CCGCC- -5'
30193 5' -59.7 NC_006273.1 + 185596 0.71 0.625409
Target:  5'- uGCAUGGCCgcuaccacaUCGggUgggAGCGGCCcGGCGGa -3'
miRNA:   3'- -UGUACCGG---------GGCaaG---UUGCCGG-CCGCC- -5'
30193 5' -59.7 NC_006273.1 + 208806 0.7 0.635038
Target:  5'- uGCAUGGgCCCaggCGAUGGCggaggagaCGGCGGg -3'
miRNA:   3'- -UGUACCgGGGcaaGUUGCCG--------GCCGCC- -5'
30193 5' -59.7 NC_006273.1 + 94123 0.7 0.635038
Target:  5'- aGCGcGaGCCCCGUgccgggCAugGGUcgCGGCGGu -3'
miRNA:   3'- -UGUaC-CGGGGCAa-----GUugCCG--GCCGCC- -5'
30193 5' -59.7 NC_006273.1 + 145600 0.7 0.635038
Target:  5'- aGCggGGgCCCGagCGACGGUCugGGCGGc -3'
miRNA:   3'- -UGuaCCgGGGCaaGUUGCCGG--CCGCC- -5'
30193 5' -59.7 NC_006273.1 + 112553 0.7 0.644665
Target:  5'- gACGcGGUCgCCGcgUCAGCGGCCGcCGGu -3'
miRNA:   3'- -UGUaCCGG-GGCa-AGUUGCCGGCcGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.