miRNA display CGI


Results 21 - 40 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30193 5' -59.7 NC_006273.1 + 114431 0.66 0.848801
Target:  5'- aGCGUaagacGCCCCGcgUCAcCGGC-GGCGGc -3'
miRNA:   3'- -UGUAc----CGGGGCa-AGUuGCCGgCCGCC- -5'
30193 5' -59.7 NC_006273.1 + 112178 0.66 0.848053
Target:  5'- aACGUGcugcgcuGCCCCGagcgcgugcUUCGGCGGUugcuggaggacgCGGCGGu -3'
miRNA:   3'- -UGUAC-------CGGGGC---------AAGUUGCCG------------GCCGCC- -5'
30193 5' -59.7 NC_006273.1 + 67703 0.67 0.841238
Target:  5'- cGCGccGCCCCGUgaCGACGaaCGGCGGc -3'
miRNA:   3'- -UGUacCGGGGCAa-GUUGCcgGCCGCC- -5'
30193 5' -59.7 NC_006273.1 + 221422 0.67 0.841238
Target:  5'- ----cGCCCCGUcCAACGcGCCuGUGGa -3'
miRNA:   3'- uguacCGGGGCAaGUUGC-CGGcCGCC- -5'
30193 5' -59.7 NC_006273.1 + 125849 0.67 0.841238
Target:  5'- ---cGGCCuCCGUgucguacggaUCGACGGCCaGCa- -3'
miRNA:   3'- uguaCCGG-GGCA----------AGUUGCCGGcCGcc -5'
30193 5' -59.7 NC_006273.1 + 230471 0.67 0.841238
Target:  5'- cCAgaaGCCCCGgcgggCGAauCGGCCGGCuGGu -3'
miRNA:   3'- uGUac-CGGGGCaa---GUU--GCCGGCCG-CC- -5'
30193 5' -59.7 NC_006273.1 + 170826 0.67 0.841238
Target:  5'- gGCAgcUGGCCUgUGUgacuuUCAuggcgaGGCCGGCGGc -3'
miRNA:   3'- -UGU--ACCGGG-GCA-----AGUug----CCGGCCGCC- -5'
30193 5' -59.7 NC_006273.1 + 75536 0.67 0.840473
Target:  5'- ---cGGCCUCGaaaccUCGGCGGCCGacuuugaacaacuGCGGc -3'
miRNA:   3'- uguaCCGGGGCa----AGUUGCCGGC-------------CGCC- -5'
30193 5' -59.7 NC_006273.1 + 34408 0.67 0.838937
Target:  5'- cACGUauuGCCCCGUggCcACGGCCagagcgaugcguuuGGCGGc -3'
miRNA:   3'- -UGUAc--CGGGGCAa-GuUGCCGG--------------CCGCC- -5'
30193 5' -59.7 NC_006273.1 + 8347 0.67 0.833507
Target:  5'- cCGU-GCCgCCGgUUggUGGCUGGCGGc -3'
miRNA:   3'- uGUAcCGG-GGCaAGuuGCCGGCCGCC- -5'
30193 5' -59.7 NC_006273.1 + 127248 0.67 0.833507
Target:  5'- --uUGGCCggGUUCAACGguuGCCGGuCGGc -3'
miRNA:   3'- uguACCGGggCAAGUUGC---CGGCC-GCC- -5'
30193 5' -59.7 NC_006273.1 + 157372 0.67 0.833507
Target:  5'- ---gGGCUgCGUcgccugCGACGGCgGGUGGa -3'
miRNA:   3'- uguaCCGGgGCAa-----GUUGCCGgCCGCC- -5'
30193 5' -59.7 NC_006273.1 + 178999 0.67 0.833507
Target:  5'- gGCGcGGUCCCG--CGAUGgagaaaacGCCGGCGGa -3'
miRNA:   3'- -UGUaCCGGGGCaaGUUGC--------CGGCCGCC- -5'
30193 5' -59.7 NC_006273.1 + 52371 0.67 0.825614
Target:  5'- ---cGGCCUCGUcCAGCaGGCucaugauagCGGCGGu -3'
miRNA:   3'- uguaCCGGGGCAaGUUG-CCG---------GCCGCC- -5'
30193 5' -59.7 NC_006273.1 + 187196 0.67 0.817566
Target:  5'- ---cGGCCCuCGggguGCGGgUGGCGGg -3'
miRNA:   3'- uguaCCGGG-GCaaguUGCCgGCCGCC- -5'
30193 5' -59.7 NC_006273.1 + 167175 0.67 0.817566
Target:  5'- -gGUGGCCacggCGggcgCAGCGGCC-GCGGn -3'
miRNA:   3'- ugUACCGGg---GCaa--GUUGCCGGcCGCC- -5'
30193 5' -59.7 NC_006273.1 + 132546 0.67 0.809368
Target:  5'- aGCGUG--CCCGUggacGCGGCCGGCGc -3'
miRNA:   3'- -UGUACcgGGGCAagu-UGCCGGCCGCc -5'
30193 5' -59.7 NC_006273.1 + 162238 0.67 0.801028
Target:  5'- uGCGUGuCCUCGUUgGGUGGCagCGGCGGg -3'
miRNA:   3'- -UGUACcGGGGCAAgUUGCCG--GCCGCC- -5'
30193 5' -59.7 NC_006273.1 + 196679 0.68 0.792552
Target:  5'- gGCGUGGCgCacg-CAGCGGCCGuaguugucGCGGu -3'
miRNA:   3'- -UGUACCGgGgcaaGUUGCCGGC--------CGCC- -5'
30193 5' -59.7 NC_006273.1 + 115606 0.68 0.792552
Target:  5'- uGCG-GGUgCCGggaCAGCGuGCCGGCGa -3'
miRNA:   3'- -UGUaCCGgGGCaa-GUUGC-CGGCCGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.