miRNA display CGI


Results 41 - 60 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30193 5' -59.7 NC_006273.1 + 214735 0.68 0.783082
Target:  5'- gACGUGGuuCCUCGUUCugcCGgagcaccguggguGCCGGCGGu -3'
miRNA:   3'- -UGUACC--GGGGCAAGuu-GC-------------CGGCCGCC- -5'
30193 5' -59.7 NC_006273.1 + 33276 0.68 0.775225
Target:  5'- aGCggGGCCuuGcggcggCAGCGGuuGGCGu -3'
miRNA:   3'- -UGuaCCGGggCaa----GUUGCCggCCGCc -5'
30193 5' -59.7 NC_006273.1 + 88557 0.68 0.775225
Target:  5'- cCAUGGCCCUGUgcuACGGCUu-CGGa -3'
miRNA:   3'- uGUACCGGGGCAaguUGCCGGccGCC- -5'
30193 5' -59.7 NC_006273.1 + 202555 0.68 0.766388
Target:  5'- aGCGUGGCCggCGU--GGCGGCCGaCGGc -3'
miRNA:   3'- -UGUACCGGg-GCAagUUGCCGGCcGCC- -5'
30193 5' -59.7 NC_006273.1 + 193182 0.68 0.757444
Target:  5'- ----cGCugCCCGUUCGGCGGCCGuCGGc -3'
miRNA:   3'- uguacCG--GGGCAAGUUGCCGGCcGCC- -5'
30193 5' -59.7 NC_006273.1 + 144198 0.68 0.757444
Target:  5'- cGCGUGGCCgagCgGUgcgaCGAcCGGCaCGGCGGc -3'
miRNA:   3'- -UGUACCGG---GgCAa---GUU-GCCG-GCCGCC- -5'
30193 5' -59.7 NC_006273.1 + 126990 0.68 0.748403
Target:  5'- gACGUGGagaCCGcggUGGCGGCCGGCa- -3'
miRNA:   3'- -UGUACCgg-GGCaa-GUUGCCGGCCGcc -5'
30193 5' -59.7 NC_006273.1 + 42226 0.68 0.748403
Target:  5'- aGCGUGGgCU---UCGGCGGCCGGUGc -3'
miRNA:   3'- -UGUACCgGGgcaAGUUGCCGGCCGCc -5'
30193 5' -59.7 NC_006273.1 + 84840 0.68 0.748403
Target:  5'- ---aGGCaCCCGa--GACGGCCgcGGCGGc -3'
miRNA:   3'- uguaCCG-GGGCaagUUGCCGG--CCGCC- -5'
30193 5' -59.7 NC_006273.1 + 186315 0.68 0.748403
Target:  5'- -----aCCaCCGuUUCAGCGGCCGGCGu -3'
miRNA:   3'- uguaccGG-GGC-AAGUUGCCGGCCGCc -5'
30193 5' -59.7 NC_006273.1 + 94490 0.68 0.748403
Target:  5'- cGCAccggGGUCCCGguucccgUCcGCGGCCcGGgGGg -3'
miRNA:   3'- -UGUa---CCGGGGCa------AGuUGCCGG-CCgCC- -5'
30193 5' -59.7 NC_006273.1 + 82040 0.69 0.739272
Target:  5'- ---cGGCCUCGgacgaAGCGGCagCGGCGGc -3'
miRNA:   3'- uguaCCGGGGCaag--UUGCCG--GCCGCC- -5'
30193 5' -59.7 NC_006273.1 + 119018 0.69 0.730058
Target:  5'- aACAUGGCUUCGgaCAggGgGGUCGGCGu -3'
miRNA:   3'- -UGUACCGGGGCaaGU--UgCCGGCCGCc -5'
30193 5' -59.7 NC_006273.1 + 76622 0.69 0.729132
Target:  5'- cCGUGGCC-------GCGGCCGGCGGc -3'
miRNA:   3'- uGUACCGGggcaaguUGCCGGCCGCC- -5'
30193 5' -59.7 NC_006273.1 + 37280 0.69 0.728206
Target:  5'- cCGUGGCCgCCGagcagcccuugCGACGGCCGGacaugcCGGc -3'
miRNA:   3'- uGUACCGG-GGCaa---------GUUGCCGGCC------GCC- -5'
30193 5' -59.7 NC_006273.1 + 148673 0.69 0.720768
Target:  5'- uCGUGGUgcggccugCCCGacaUCGugGGCCGGcCGGc -3'
miRNA:   3'- uGUACCG--------GGGCa--AGUugCCGGCC-GCC- -5'
30193 5' -59.7 NC_006273.1 + 231741 0.69 0.711412
Target:  5'- -aGUGGCCCCaccUCGGCauGCCGGCGc -3'
miRNA:   3'- ugUACCGGGGca-AGUUGc-CGGCCGCc -5'
30193 5' -59.7 NC_006273.1 + 101158 0.69 0.692528
Target:  5'- cGCAaGGCCUCGggCAcgggcgugGCGGCCGuaGGc -3'
miRNA:   3'- -UGUaCCGGGGCaaGU--------UGCCGGCcgCC- -5'
30193 5' -59.7 NC_006273.1 + 173432 0.7 0.673465
Target:  5'- aGCGUGGCCCCGUUgugguagAACGGCaacCGGu -3'
miRNA:   3'- -UGUACCGGGGCAAg------UUGCCGgccGCC- -5'
30193 5' -59.7 NC_006273.1 + 64243 0.7 0.670594
Target:  5'- gACcUGGCCCgCGggCAcgggcguugcggcgGCGGCCGaaGCGGa -3'
miRNA:   3'- -UGuACCGGG-GCaaGU--------------UGCCGGC--CGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.