miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30193 5' -59.7 NC_006273.1 + 1429 0.66 0.863399
Target:  5'- -gGUGGaCCCCGcggccgaccCGACGGUgGGCGa -3'
miRNA:   3'- ugUACC-GGGGCaa-------GUUGCCGgCCGCc -5'
30193 5' -59.7 NC_006273.1 + 1646 0.66 0.848801
Target:  5'- gGCGUGGgcaCCCCGcgcgCGACGcugcugccucaGCCGGCGc -3'
miRNA:   3'- -UGUACC---GGGGCaa--GUUGC-----------CGGCCGCc -5'
30193 5' -59.7 NC_006273.1 + 8347 0.67 0.833507
Target:  5'- cCGU-GCCgCCGgUUggUGGCUGGCGGc -3'
miRNA:   3'- uGUAcCGG-GGCaAGuuGCCGGCCGCC- -5'
30193 5' -59.7 NC_006273.1 + 19408 0.73 0.493716
Target:  5'- ---aGGCCUgGUUaCAgcGCGGCCGGCGa -3'
miRNA:   3'- uguaCCGGGgCAA-GU--UGCCGGCCGCc -5'
30193 5' -59.7 NC_006273.1 + 25446 0.71 0.596575
Target:  5'- cUAUGGCgCCGUggguuggCAGCuGGCCGGCu- -3'
miRNA:   3'- uGUACCGgGGCAa------GUUG-CCGGCCGcc -5'
30193 5' -59.7 NC_006273.1 + 33231 0.72 0.530359
Target:  5'- cGCAccgagGGCCCCGg--GGCGGCgacgaCGGCGGg -3'
miRNA:   3'- -UGUa----CCGGGGCaagUUGCCG-----GCCGCC- -5'
30193 5' -59.7 NC_006273.1 + 33276 0.68 0.775225
Target:  5'- aGCggGGCCuuGcggcggCAGCGGuuGGCGu -3'
miRNA:   3'- -UGuaCCGGggCaa----GUUGCCggCCGCc -5'
30193 5' -59.7 NC_006273.1 + 34241 0.66 0.870424
Target:  5'- cACAgGGCCgCCGgcaggCAGCGGCCGaugaguucGCGc -3'
miRNA:   3'- -UGUaCCGG-GGCaa---GUUGCCGGC--------CGCc -5'
30193 5' -59.7 NC_006273.1 + 34408 0.67 0.838937
Target:  5'- cACGUauuGCCCCGUggCcACGGCCagagcgaugcguuuGGCGGc -3'
miRNA:   3'- -UGUAc--CGGGGCAa-GuUGCCGG--------------CCGCC- -5'
30193 5' -59.7 NC_006273.1 + 36275 0.66 0.848801
Target:  5'- --uUGGCCUCGUaCAGCGaGCU-GCGGu -3'
miRNA:   3'- uguACCGGGGCAaGUUGC-CGGcCGCC- -5'
30193 5' -59.7 NC_006273.1 + 37280 0.69 0.728206
Target:  5'- cCGUGGCCgCCGagcagcccuugCGACGGCCGGacaugcCGGc -3'
miRNA:   3'- uGUACCGG-GGCaa---------GUUGCCGGCC------GCC- -5'
30193 5' -59.7 NC_006273.1 + 38619 0.66 0.85619
Target:  5'- cACAUGGaCCCCGagCAGgacuaucguCuGCCGGCGc -3'
miRNA:   3'- -UGUACC-GGGGCaaGUU---------GcCGGCCGCc -5'
30193 5' -59.7 NC_006273.1 + 41356 0.7 0.663885
Target:  5'- ---gGGCCCacgcgCGUUCGcGCGGCCaguuGGCGGg -3'
miRNA:   3'- uguaCCGGG-----GCAAGU-UGCCGG----CCGCC- -5'
30193 5' -59.7 NC_006273.1 + 42226 0.68 0.748403
Target:  5'- aGCGUGGgCU---UCGGCGGCCGGUGc -3'
miRNA:   3'- -UGUACCgGGgcaAGUUGCCGGCCGCc -5'
30193 5' -59.7 NC_006273.1 + 44636 0.66 0.863399
Target:  5'- -uGUGGUa-CGUUCGGCGGCagcuGGUGGc -3'
miRNA:   3'- ugUACCGggGCAAGUUGCCGg---CCGCC- -5'
30193 5' -59.7 NC_006273.1 + 45227 0.66 0.863399
Target:  5'- gACAUGGUCCaauacgGUcaUCGACGGCgucccggacaCGGCGa -3'
miRNA:   3'- -UGUACCGGGg-----CA--AGUUGCCG----------GCCGCc -5'
30193 5' -59.7 NC_006273.1 + 46559 0.66 0.870424
Target:  5'- gGCGUGcccaGCCCCGUauacgcacUCGA-GGCCuuGGUGGa -3'
miRNA:   3'- -UGUAC----CGGGGCA--------AGUUgCCGG--CCGCC- -5'
30193 5' -59.7 NC_006273.1 + 52371 0.67 0.825614
Target:  5'- ---cGGCCUCGUcCAGCaGGCucaugauagCGGCGGu -3'
miRNA:   3'- uguaCCGGGGCAaGUUG-CCG---------GCCGCC- -5'
30193 5' -59.7 NC_006273.1 + 64243 0.7 0.670594
Target:  5'- gACcUGGCCCgCGggCAcgggcguugcggcgGCGGCCGaaGCGGa -3'
miRNA:   3'- -UGuACCGGG-GCaaGU--------------UGCCGGC--CGCC- -5'
30193 5' -59.7 NC_006273.1 + 67703 0.67 0.841238
Target:  5'- cGCGccGCCCCGUgaCGACGaaCGGCGGc -3'
miRNA:   3'- -UGUacCGGGGCAa-GUUGCcgGCCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.