miRNA display CGI


Results 21 - 40 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30193 5' -59.7 NC_006273.1 + 75536 0.67 0.840473
Target:  5'- ---cGGCCUCGaaaccUCGGCGGCCGacuuugaacaacuGCGGc -3'
miRNA:   3'- uguaCCGGGGCa----AGUUGCCGGC-------------CGCC- -5'
30193 5' -59.7 NC_006273.1 + 76622 0.69 0.729132
Target:  5'- cCGUGGCC-------GCGGCCGGCGGc -3'
miRNA:   3'- uGUACCGGggcaaguUGCCGGCCGCC- -5'
30193 5' -59.7 NC_006273.1 + 76695 0.66 0.848801
Target:  5'- cGCGUGuGCCCUGccUC-ACGGCUGGUc- -3'
miRNA:   3'- -UGUAC-CGGGGCa-AGuUGCCGGCCGcc -5'
30193 5' -59.7 NC_006273.1 + 82040 0.69 0.739272
Target:  5'- ---cGGCCUCGgacgaAGCGGCagCGGCGGc -3'
miRNA:   3'- uguaCCGGGGCaag--UUGCCG--GCCGCC- -5'
30193 5' -59.7 NC_006273.1 + 83320 0.66 0.85619
Target:  5'- cGCGUGGUccggguggaCCCGgcgUgGugGGacCCGGCGGc -3'
miRNA:   3'- -UGUACCG---------GGGCa--AgUugCC--GGCCGCC- -5'
30193 5' -59.7 NC_006273.1 + 84052 0.66 0.863399
Target:  5'- -aAUGaGCCgCGa--AGCGGCgGGCGGa -3'
miRNA:   3'- ugUAC-CGGgGCaagUUGCCGgCCGCC- -5'
30193 5' -59.7 NC_006273.1 + 84840 0.68 0.748403
Target:  5'- ---aGGCaCCCGa--GACGGCCgcGGCGGc -3'
miRNA:   3'- uguaCCG-GGGCaagUUGCCGG--CCGCC- -5'
30193 5' -59.7 NC_006273.1 + 88557 0.68 0.775225
Target:  5'- cCAUGGCCCUGUgcuACGGCUu-CGGa -3'
miRNA:   3'- uGUACCGGGGCAaguUGCCGGccGCC- -5'
30193 5' -59.7 NC_006273.1 + 94123 0.7 0.635038
Target:  5'- aGCGcGaGCCCCGUgccgggCAugGGUcgCGGCGGu -3'
miRNA:   3'- -UGUaC-CGGGGCAa-----GUugCCG--GCCGCC- -5'
30193 5' -59.7 NC_006273.1 + 94490 0.68 0.748403
Target:  5'- cGCAccggGGUCCCGguucccgUCcGCGGCCcGGgGGg -3'
miRNA:   3'- -UGUa---CCGGGGCa------AGuUGCCGG-CCgCC- -5'
30193 5' -59.7 NC_006273.1 + 94888 0.66 0.877259
Target:  5'- gGCAgucGGUCCCGgaaggUUGGgGGCUGGgGGc -3'
miRNA:   3'- -UGUa--CCGGGGCa----AGUUgCCGGCCgCC- -5'
30193 5' -59.7 NC_006273.1 + 101158 0.69 0.692528
Target:  5'- cGCAaGGCCUCGggCAcgggcgugGCGGCCGuaGGc -3'
miRNA:   3'- -UGUaCCGGGGCaaGU--------UGCCGGCcgCC- -5'
30193 5' -59.7 NC_006273.1 + 112178 0.66 0.848053
Target:  5'- aACGUGcugcgcuGCCCCGagcgcgugcUUCGGCGGUugcuggaggacgCGGCGGu -3'
miRNA:   3'- -UGUAC-------CGGGGC---------AAGUUGCCG------------GCCGCC- -5'
30193 5' -59.7 NC_006273.1 + 112553 0.7 0.644665
Target:  5'- gACGcGGUCgCCGcgUCAGCGGCCGcCGGu -3'
miRNA:   3'- -UGUaCCGG-GGCa-AGUUGCCGGCcGCC- -5'
30193 5' -59.7 NC_006273.1 + 114181 0.71 0.584135
Target:  5'- cACAUGGgCCCGUUCGAaggcuacucuauguCGGCCGaucGCGc -3'
miRNA:   3'- -UGUACCgGGGCAAGUU--------------GCCGGC---CGCc -5'
30193 5' -59.7 NC_006273.1 + 114431 0.66 0.848801
Target:  5'- aGCGUaagacGCCCCGcgUCAcCGGC-GGCGGc -3'
miRNA:   3'- -UGUAc----CGGGGCa-AGUuGCCGgCCGCC- -5'
30193 5' -59.7 NC_006273.1 + 115606 0.68 0.792552
Target:  5'- uGCG-GGUgCCGggaCAGCGuGCCGGCGa -3'
miRNA:   3'- -UGUaCCGgGGCaa-GUUGC-CGGCCGCc -5'
30193 5' -59.7 NC_006273.1 + 116851 0.75 0.368486
Target:  5'- cACGUGGCUuuGUgcagCGugGGUCGGCGu -3'
miRNA:   3'- -UGUACCGGggCAa---GUugCCGGCCGCc -5'
30193 5' -59.7 NC_006273.1 + 119018 0.69 0.730058
Target:  5'- aACAUGGCUUCGgaCAggGgGGUCGGCGu -3'
miRNA:   3'- -UGUACCGGGGCaaGU--UgCCGGCCGCc -5'
30193 5' -59.7 NC_006273.1 + 120568 0.73 0.493716
Target:  5'- uGCAUGGCCCgGgcaaGGCGucuuGCCGGUGGc -3'
miRNA:   3'- -UGUACCGGGgCaag-UUGC----CGGCCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.